Merge pull request #675 from opencb/TASK-5061

TASK-5061 - Replace the mongoDB step in the Cellbase build with a kubectl that tunnels to a machine where the test data already exists

.github/workflows/test-analysis.yml

@@ -20,11 +20,12 @@ jobs:
           distribution: 'temurin'
           java-version: '11'
           cache: 'maven'
-      - name: Start MongoDB v6.0
-        uses: supercharge/[email protected]
-        with:
-          mongodb-version: 6.0
-          mongodb-replica-set: rs-test
+      - name: K8s Tunnel MongoDB
+        run: |
+          wget https://dl.k8s.io/release/v1.28.2/bin/linux/amd64/kubectl
+          chmod +x ./kubectl
+          echo "${{ secrets.AZURE_KUBE_CONFIG }}" > admin.conf 
+          ./kubectl -n cellbase-db port-forward services/cellbase-rs0-svc 27017:27017 --kubeconfig ./admin.conf &
       - name: Install dependencies branches
         run: |
           if [ -f "./.github/workflows/scripts/get_same_branch.sh" ]; then

cellbase-lib/src/test/resources/configuration.test.yaml

@@ -8,10 +8,11 @@ secretKey: "xPacig89igHSieEnveJEi4KCfdEslhmssC3vui1JJQGgDQ0y8v"
 databases:
   mongodb:
     host: localhost:27017
-    user: ''
-    password: ''
+    user: 'cellbase'
+    password: 'cellbase'
     options:
-      authenticationDatabase: ''
+      authenticationDatabase: 'admin'
+      authenticationMechanism: 'SCRAM-SHA-256'
       readPreference: ''
       replicaSet: ''
       connectionsPerHost: 20