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TASK-5571 Autocomplete with ontologies not working for CMH #686

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merged 2 commits into from
Feb 5, 2024
Merged

TASK-5571 Autocomplete with ontologies not working for CMH #686

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0218f40
lib: ignore the query parameter apiKey when building the BSON object …
jtarraga Feb 1, 2024
ed83935
lib: use ParamConstants to the parameters name (dataRelease and apiKe…
jtarraga Feb 2, 2024
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13 changes: 10 additions & 3 deletions cellbase-lib/src/main/java/org/opencb/cellbase/lib/impl/core/OntologyMongoDBAdaptor.java
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Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@
import org.bson.Document;
import org.bson.conversions.Bson;
import org.opencb.biodata.models.core.OntologyTerm;
import org.opencb.cellbase.core.ParamConstants;
import org.opencb.cellbase.core.api.OntologyQuery;
import org.opencb.cellbase.core.api.query.ProjectionQueryOptions;
import org.opencb.cellbase.core.exception.CellBaseException;
Expand Down Expand Up @@ -114,9 +115,15 @@ public Bson parseQuery(OntologyQuery query) {
try {
for (Map.Entry<String, Object> entry : query.toObjectMap().entrySet()) {
String dotNotationName = entry.getKey();
if (!"dataRelease".equals(dotNotationName)) {
Object value = entry.getValue();
createAndOrQuery(value, dotNotationName, QueryParam.Type.STRING, andBsonList);
switch (dotNotationName) {
case ParamConstants.DATA_RELEASE_PARAM:
case ParamConstants.API_KEY_PARAM:
// Nothing to do
break;
default: {
Object value = entry.getValue();
createAndOrQuery(value, dotNotationName, QueryParam.Type.STRING, andBsonList);
}
}
}
} catch (IllegalAccessException e) {
Expand Down
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