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Prepare new development branch release-6.2.x #202

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Prepare new development branch release-6.2.x

Prepare new development branch release-6.2.x #202

GitHub Actions / Surefire tests report failed Jul 17, 2024 in 0s

160 tests run, 89 skipped, 20 failed.

Annotations

Check failure on line 34 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryStartOutOfLeftBound 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)

Check failure on line 34 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceChromosomeNotPresent 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)

Check failure on line 34 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryEndOutOfRightBound 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)

Check failure on line 34 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/CellBaseNormalizerSequenceAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

CellBaseNormalizerSequenceAdaptorTest.testGenomicSequenceQueryStartEndOutOfRightBound 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.CellBaseNormalizerSequenceAdaptorTest.<init>(CellBaseNormalizerSequenceAdaptorTest.java:34)

Check failure on line 76 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GeneMongoDBAdaptorTest.testQuery 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQuery(GeneMongoDBAdaptorTest.java:76)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQuery(GeneMongoDBAdaptorTest.java:76)

Check failure on line 56 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GeneMongoDBAdaptorTest.testQueryId 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQueryId(GeneMongoDBAdaptorTest.java:56)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testQueryId(GeneMongoDBAdaptorTest.java:56)

Check failure on line 128 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GeneMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GeneMongoDBAdaptorTest.testConstraints 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testConstraints(GeneMongoDBAdaptorTest.java:128)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GeneMongoDBAdaptorTest.testConstraints(GeneMongoDBAdaptorTest.java:128)

Check failure on line 84 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GenomeMongoDBAdaptorTest.testGenomicSequenceChromosomeNotPresent 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceChromosomeNotPresent(GenomeMongoDBAdaptorTest.java:84)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceChromosomeNotPresent(GenomeMongoDBAdaptorTest.java:84)

Check failure on line 57 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GenomeMongoDBAdaptorTest.getChromosomeInfo 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getChromosomeInfo(GenomeMongoDBAdaptorTest.java:57)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getChromosomeInfo(GenomeMongoDBAdaptorTest.java:57)

Check failure on line 92 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GenomeMongoDBAdaptorTest.testGenomicSequenceQueryOutOfBounds 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceQueryOutOfBounds(GenomeMongoDBAdaptorTest.java:92)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGenomicSequenceQueryOutOfBounds(GenomeMongoDBAdaptorTest.java:92)

Check failure on line 68 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GenomeMongoDBAdaptorTest.getGenomicSequence 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getGenomicSequence(GenomeMongoDBAdaptorTest.java:68)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.getGenomicSequence(GenomeMongoDBAdaptorTest.java:68)

Check failure on line 111 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/GenomeMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

GenomeMongoDBAdaptorTest.testGetCytoband 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGetCytoband(GenomeMongoDBAdaptorTest.java:111)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.GenomeMongoDBAdaptorTest.testGetCytoband(GenomeMongoDBAdaptorTest.java:111)

Check failure on line 67 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/PharmacogenomicsMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

PharmacogenomicsMongoDBAdaptorTest.testQuery 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQuery(PharmacogenomicsMongoDBAdaptorTest.java:67)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQuery(PharmacogenomicsMongoDBAdaptorTest.java:67)

Check failure on line 50 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/PharmacogenomicsMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

PharmacogenomicsMongoDBAdaptorTest.testQueryName 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQueryName(PharmacogenomicsMongoDBAdaptorTest.java:50)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.PharmacogenomicsMongoDBAdaptorTest.testQueryName(PharmacogenomicsMongoDBAdaptorTest.java:50)

Check failure on line 51 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/ProteinMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

ProteinMongoDBAdaptorTest.testQuery 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.ProteinMongoDBAdaptorTest.testQuery(ProteinMongoDBAdaptorTest.java:51)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.ProteinMongoDBAdaptorTest.testQuery(ProteinMongoDBAdaptorTest.java:51)

Check failure on line 49 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/TranscriptMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

TranscriptMongoDBAdaptorTest.testQuery 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.TranscriptMongoDBAdaptorTest.testQuery(TranscriptMongoDBAdaptorTest.java:49)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.TranscriptMongoDBAdaptorTest.testQuery(TranscriptMongoDBAdaptorTest.java:49)

Check failure on line 54 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/VariantAnnotationCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantAnnotationCalculatorTest.org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.<init>(VariantAnnotationCalculatorTest.java:54)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.VariantAnnotationCalculatorTest.<init>(VariantAnnotationCalculatorTest.java:54)

Check failure on line 46 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/impl/core/XRefMongoDBAdaptorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

XRefMongoDBAdaptorTest.queryTest 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.XRefMongoDBAdaptorTest.queryTest(XRefMongoDBAdaptorTest.java:46)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.impl.core.XRefMongoDBAdaptorTest.queryTest(XRefMongoDBAdaptorTest.java:46)

Check failure on line 49 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/variant/VariantManagerTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

VariantManagerTest.org.opencb.cellbase.lib.variant.VariantManagerTest 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.variant.VariantManagerTest.<init>(VariantManagerTest.java:49)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.variant.VariantManagerTest.<init>(VariantManagerTest.java:49)

Check failure on line 37 in cellbase-lib/src/test/java/org/opencb/cellbase/lib/variant/hgvs/HgvsCalculatorTest.java

See this annotation in the file changed.

@github-actions github-actions / Surefire tests report

HgvsCalculatorTest.org.opencb.cellbase.lib.variant.hgvs.HgvsCalculatorTest 

java.lang.NullPointerException
	at org.opencb.cellbase.lib.variant.hgvs.HgvsCalculatorTest.<init>(HgvsCalculatorTest.java:37)
Raw output 
java.lang.NullPointerException
	at org.opencb.cellbase.lib.variant.hgvs.HgvsCalculatorTest.<init>(HgvsCalculatorTest.java:37)
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