qc: Individual QC add plink check-sex and impute-sex functions. #TASK… #2334
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| name: Push OpenCGA TASK | |
| on: | |
| push: | |
| branches: | |
| - TASK-* | |
| workflow_dispatch: | |
| # WARNING Develop branch needed for prod | |
| jobs: | |
| build: | |
| uses: opencb/java-common-libs/.github/workflows/build-java-app-workflow.yml@develop | |
| with: | |
| maven_opts: -Phdp3.1,RClient -Dopencga.war.name=opencga -Dcheckstyle.skip | |
| test: | |
| uses: ./.github/workflows/test-analysis.yml | |
| needs: build | |
| with: | |
| test_profile: runShortTests | |
| secrets: inherit | |
| deploy-docker: | |
| uses: opencb/java-common-libs/.github/workflows/deploy-docker-hub-workflow.yml@develop | |
| needs: test | |
| with: | |
| cli: python3 ./build/cloud/docker/docker-build.py push --images base,init --tag ${{ github.ref_name }} | |
| secrets: inherit |