storage: Allow reloading an indexed variant file. #TASK-4794 #1127
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| name: Push OpenCGA TASK | |
| on: | |
| push: | |
| branches: | |
| - TASK-* | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| uses: opencb/java-common-libs/.github/workflows/[email protected] | |
| with: | |
| maven_opts: -P storage-hadoop,hdp3.1,RClient,opencga-storage-hadoop-deps -Dopencga.war.name=opencga -Dcheckstyle.skip -pl '!:opencga-storage-hadoop-deps-emr6.1,!:opencga-storage-hadoop-deps-hdp2.6' | |
| test: | |
| uses: ./.github/workflows/test-analysis.yml | |
| needs: build | |
| secrets: inherit | |
| with: | |
| test_profile: runShortTests | |
| report_context: development | |
| deploy-maven: | |
| name: Deploy in maven only for renamed versions | |
| uses: opencb/java-common-libs/.github/workflows/[email protected] | |
| needs: [ build, test ] | |
| if: contains( needs.build.outputs.version ,'TASK') | |
| secrets: inherit | |
| deploy-docker: | |
| uses: opencb/java-common-libs/.github/workflows/[email protected] | |
| needs: test | |
| with: | |
| cli: python3 ./build/cloud/docker/docker-build.py push --images base,init --tag ${{ github.ref_name }} | |
| secrets: inherit | |
| # The following jobs are to see that the previous 'if' doesn't fail and that the maven deploy is executed because it is true | |
| snapshot-version: | |
| name: Check SNAPSHOT version | |
| needs: [ build, test ] | |
| if: contains(needs.build.outputs.version ,'SNAPSHOT') | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: test-version-from-check | |
| run: echo "Project version is " ${{ needs.build.outputs.version }} | |
| task-version: | |
| name: Check TASK version | |
| needs: [ build, test ] | |
| if: contains(needs.build.outputs.version ,'TASK') | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: test-version-from-check | |
| run: echo "Project version is " ${{ needs.build.outputs.version }} |