catalog: create Organization db adaptor, #TASK-4389 #1137
pfuriotask.yml
on: push
build
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Build Java app
22m 3s
test
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Execute Sonar Analysis
9m 6s
test
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Execute JUnit and Jacoco tests
7m 56s
deploy-docker
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Push Docker image
Annotations
4 errors
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CatalogIOManagerTest.testCreateAccount:
opencga-catalog/src/test/java/org/opencb/opencga/catalog/io/CatalogIOManagerTest.java#L64
Path 'file:///home/runner/work/opencga/opencga/opencga-catalog/target/test-data/opencga-PosixIOManagerTest-20230810144342878/sessions/orgs/opencb/users' does not exist
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CatalogIOManagerTest.testCreateStudy:
opencga-catalog/src/test/java/org/opencb/opencga/catalog/io/CatalogIOManagerTest.java#L80
Path 'file:///home/runner/work/opencga/opencga/opencga-catalog/target/test-data/opencga-PosixIOManagerTest-20230810144342878/sessions/orgs/opencb/users' does not exist
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VariantFieldTest.checkAnnotationSubFields:
opencga-storage/opencga-storage-core/src/test/java/org/opencb/opencga/storage/core/variant/adaptors/VariantFieldTest.java#L43
expected:<[additionalAttributes, alternate, ancestralAllele, cancerHotspots, chromosome, consequenceTypes, conservation, cytoband, displayConsequenceType, drugs, end, functionalScore, geneCancerAssociations, geneConstraints, geneDrugInteraction, geneExpression, geneMirnaTargets, geneTraitAssociation, gwas, hgvs, id, minorAllele, minorAlleleFreq, pharmacogenomics, populationFrequencies, reference, repeat, start, traitAssociation, xrefs]> but was:<[additionalAttributes, alternate, ancestralAllele, cancerHotspots, chromosome, consequenceTypes, conservation, cytoband, displayConsequenceType, drugs, end, functionalScore, geneCancerAssociations, geneConstraints, geneDrugInteraction, geneExpression, geneMirnaTargets, geneTraitAssociation, gwas, hgvs, id, minorAllele, minorAlleleFreq, populationFrequencies, reference, repeat, start, traitAssociation, xrefs]>
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test / Execute JUnit and Jacoco tests
There were 3 failed tests
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build-folder
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