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TASK-7207 - Fix Organization migration issue #2531

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TASK-7207 - Fix Organization migration issue #2531

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be61b15
app: ensure all jobs have an attributes field, #TASK-7207
pfurio Nov 15, 2024
d30dac9
app: Always rename studies from storage when changing organization id…
j-coll Nov 15, 2024
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10 changes: 8 additions & 2 deletions ...-app/src/main/java/org/opencb/opencga/app/migrations/v3/v3_0_0/OrganizationMigration.java
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Original file line number Diff line number Diff line change
Expand Up @@ -579,9 +579,15 @@ private void changeFqns() throws CatalogDBException, MigrationException {
))
);

// Ensure all jobs have attributes field
Bson jobQuery = Filters.eq("attributes", null);
Bson update = new Document("$set", new Document("attributes", new Document()));
jobCollection.updateMany(jobQuery, update);
jobDeletedCollection.updateMany(jobQuery, update);

// Change fqn in all jobs that were pointing to this study
Bson jobQuery = Filters.eq("studyUid", studyUid);
Bson update = new Document("$set", new Document()
jobQuery = Filters.eq("studyUid", studyUid);
update = new Document("$set", new Document()
.append("study.id", newFqn)
.append("attributes.OPENCGA.3_0_0", new Document()
.append("date", date)
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