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@github-actions github-actions released this 28 Apr 09:07
0.22.0
f29ca51

Release notes for cobrapy 0.22.0

New features

  • Add support for the OSQP and COIN-OR CBC solvers (#946)

Fixes

  • Fix the Reaction.compartments attribute not updating after metabolite changes (#1055)
  • Lots of syntax, annotation, and docstring fixes (#1058, #1059, #1060, #1063,
    #1065, #1066, #1076, #1077, #1080)
  • Multiprocessing on windows now sends data to processes via a pickle file which
    should speed up any multiprocessing initialization (#1070)
  • Upgrade optlang and fix some tolerance issues (#1011)
  • Enable Python 3.9 (#1082)

Documentation

  • Document boundary reactions (#1038)
  • Documentation is now built again on each release (#1047)
  • Clarify pfba in the documentation (#1049)

Other

  • COBRApy source code releases are now deposited on Zenodo which provides a
    citeable DOI (#1061)
  • COBRApy creates automatic releases to BioSimulators (#1064)
  • Fix deployment of releases to the website (#1068)
  • Improve the pyproject.toml config (#1067)

Backwards incompatible changes

  • Remove some particular cobra.Reaction.lower_bound and .upper_bound
    behaviour that has been deprecated for a long time.
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