Skip to content

Commit

Permalink
Sync files from source repo
Browse files Browse the repository at this point in the history
  • Loading branch information
actions-user committed Nov 4, 2024
1 parent ec9e106 commit 0f7d9bb
Show file tree
Hide file tree
Showing 2 changed files with 363 additions and 0 deletions.
7 changes: 7 additions & 0 deletions stable/tutorials/index.html
Original file line number Diff line number Diff line change
Expand Up @@ -474,6 +474,13 @@ <h3>
</span>
</a>
</li>
<li>
<a href="tutorialdriver_initConservedMoietyPaths.html">
<span class="doc">
Initialisation of conserved moiety tutorials
</span>
</a>
</li>
</ul>
<br/>
</div>
Expand Down
356 changes: 356 additions & 0 deletions stable/tutorials/tutorialdriver_initConservedMoietyPaths.html
Original file line number Diff line number Diff line change
@@ -0,0 +1,356 @@


<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">

<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>tutorialNoName &mdash; The COBRA Toolbox</title>





<link rel="apple-touch-icon" sizes="180x180" href="../_static/img/apple-touch-icon.png">


<link rel="icon" type="image/png" sizes="32x32" href="../_static/img/favicon-32x32.png">


<link rel="icon" type="image/png" sizes="16x16" href="../_static/img/favicon-16x16.png">


<link rel="mask-icon" href="../_static/img/safari-pinned-tab.svg" color="#5bbad5">


<link rel="manifest" href="../_static/json/manifest.json">


<meta name="msapplication-config" content="../_static/browserconfig.xml">

<meta name="theme-color" content="#ffffff">


<script src="https://ajax.googleapis.com/ajax/libs/jquery/3.2.1/jquery.min.js"></script>
<script src="https://code.jquery.com/jquery-1.11.2.min.js"></script>
<script src="../_static/js/jquery.easy-autocomplete.min.js" type="text/javascript" ></script>

<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js"></script>

<link rel="stylesheet" href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css">
<link href='https://fonts.googleapis.com/css?family=Lato:400,700|Roboto+Slab:400,700|Inconsolata:400,700' rel='stylesheet' type='text/css'>
<link href="../_static/css/easy-autocomplete.min.css" rel="stylesheet" type="text/css">
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css">









<link rel="stylesheet" href="../_static/css/cobra.css" type="text/css" />





<link rel="index" title="Index"
href="../genindex.html"/>
<link rel="search" title="Search" href="../search.html"/>
<link rel="top" title="The COBRA Toolbox" href="../index.html"/>


<script src="../_static/js/modernizr.min.js"></script>
</head>

<body class="wy-body-for-nav" role="document">


<div class="wy-grid-for-nav">


<nav data-toggle="wy-nav-shift" class="wy-nav-side">
<div class="wy-side-scroll">
<div class="wy-side-nav-search">



<a href="../index.html" class="icon icon-home"> The COBRA Toolbox



<img src="../_static/img/logo.png" class="logo" alt="cobratoolbox logo" />

</a>


<h1>The COBRA Toolbox</h1>




<div role="search">
<form id="rtd-search-form" class="wy-form" action="../search.html" method="get">
<input type="text" name="q" placeholder="Search docs" id="simple"/>
<input type="hidden" name="check_keywords" value="yes" />
<input type="hidden" name="area" value="default" />
<script>
var options = {

url: "../_static/json/functions.json",

getValue: "name",

list: {
onKeyEnterEvent: function(item) {
return "_static/../" + item.website_url
},
maxNumberOfElements: 25,
match: {
enabled: true,
},
sort: {
enabled: true
}
},

template: {
type: "custom",
method: function(value, item) {
return "<span><a href='../_static/../" + item.website_url + "' >" + value + "</a>" + "<a href='../_static/../" + item.website_url + "' ><img src='../_static/link.svg'/></a></span>";
}
},

theme: "square"

};

$("#simple").easyAutocomplete(options);


</script>
</form>
</div>


</div>

<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">

<ul class="current">
<li class="toctree-l1"><a class="reference internal" href="../index.html">Home</a></li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="../installation.html">Installation</a></li>
<li class="toctree-l1"><a class="reference internal" href="../modules/index.html">Functions</a></li>
<li class="toctree-l1"><a class="reference internal" href="index.html">Tutorials</a></li>
<li class="toctree-l1"><a class="reference internal" href="../contributing.html">How to contribute</a></li>
<li class="toctree-l1"><a class="reference internal" href="../cite.html">How to cite</a></li>
<li class="toctree-l1"><a class="reference internal" href="../support.html">Support</a></li>
<li class="toctree-l1"><a class="reference internal" href="../faq.html">FAQ</a></li>
<li class="toctree-l1"><a class="reference internal" href="../contributors.html">Contributors</a></li>
<li class="toctree-l1"><a class="reference internal" href="../funding.html">Funding</a></li>
<li class="toctree-l1"><a class="reference internal" href="../plan.html">Development Plan</a></li>
<li class="toctree-l1"><a class="reference internal" href="../contact.html">Contact</a></li>
<li class="toctree-l1"><a class="reference internal" href="../citations.html">Citations</a></li>
</ul>


</div>
</div>
</nav>

<section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">


<nav class="wy-nav-top" role="navigation" aria-label="top navigation">

<i data-toggle="wy-nav-top" class="fa fa-bars"></i>
<a href="../index.html">The COBRA Toolbox</a>

</nav>



<div class="wy-nav-content">
<div class="rst-content">
<div role="navigation" aria-label="Page navigation">
<ul class="wy-breadcrumbs">
<li><a href="../contents.html" class="icon icon-home"></a> &raquo;</li>
<li>tutorialNoName</li>
<li class="wy-breadcrumbs-aside">
</li>
</ul>
<hr/>
</div>
<div role="main" class="document" itemscope="itemscope" itemtype="https://schema.org/Article">
<div itemprop="articleBody">

<div class="section" id="tutorialnoname">
<span id="tutorialadditionalconstraintsandvariables"></span><h1>tutorialNoName<a class="headerlink" href="#tutorialnoname" title="Permalink to this headline"></a></h1>
<div class="wrapper">
<ul class="metro">
<li class="small-tile-text color_class5 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="../_static/cobratoolbox/tutorials/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.pdf">
<img src="../_static/img/icon5.png" height="90px" alt="PDF file">
</a>
<div>Download PDF</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class6 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.mlx">
<img src="../_static/img/icon6.png" height="90px" alt="live Script">
</a>
<div>Download live Script</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class7 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/raw/master/reconstruction/constrainingModels/tutorial_AdditionalConstraintsAndVariables.m">
<img src="../_static/img/icon7.png" height="90px" alt="m file">
</a>
<div>Download m file</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class8 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://github.com/opencobra/COBRA.tutorials/tree/master/reconstruction/constrainingModels">
<img src="../_static/img/icon8.png" height="90px" alt="GitHub">
</a>
<div>View on GitHub</div>
</li>
&nbsp;&nbsp;&nbsp;&nbsp;
<li class="small-tile-text color_class2 scale-10">
<a class="tile" style="width: 90px; height: 90px;" href="https://opencobra.github.io/cobratoolbox/latest/tutorials/index.html">
<img src="../_static/img/icon2.png" height="90px" alt="tutorials">
</a>
<div>Tutorials</div>
</li>
</ul>
</div>
<br><style>
h1 {font-size:0px}
</style>
<div style="margin:-30px; margin-right:-30px;">
<iframe src="analysis/conservedMoieties/driver_initConservedMoietyPaths.html" width="100%" scrolling="no" id="iFrame1" onload="onMyFrameLoad(this)" frameborder="0"></iframe>
</div>
<script>


function onMyFrameLoad() {
var iFrame = document.getElementById( 'iFrame1' );
let h = iFrame.contentWindow.document.body.scrollHeight;
let heightStyle = h.toString() + "px";
iFrame.style.height = heightStyle;

console.log(iFrame.contentWindow.document.body.scrollHeight);
};
</script>
<script type="text/javascript" src="../_static/js/iframeResizer.min.js"></script>
<script type="text/javascript">

iFrameResize({
log : true, // Enable console logging
enablePublicMethods : true, // Enable methods within iframe hosted page
resizedCallback : function(messageData){ // Callback fn when resize is received
$('p#callback').html(
'<b>Frame ID:</b> ' + messageData.iframe.id +
' <b>Height:</b> ' + messageData.height +
' <b>Width:</b> ' + messageData.width +
' <b>Event type:</b> ' + messageData.type
);
},
messageCallback : function(messageData){ // Callback fn when message is received
$('p#callback').html(
'<b>Frame ID:</b> ' + messageData.iframe.id +
' <b>Message:</b> ' + messageData.message
);
alert(messageData.message);
},
closedCallback : function(id){ // Callback fn when iFrame is closed
$('p#callback').html(
'<b>IFrame (</b>' + id +
'<b>) removed from page.</b>'
);
}
});
</script></div>


</div>
<div class="articleComments">

</div>
</div>
<footer>


<hr/>

<div role="contentinfo">
<p>
&copy; Copyright 2017-2021, The COBRA Toolbox developers.

</p>
</div>
Built with Sphinx using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.

</footer>

</div>
</div>

</section>

</div>




<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'../',
VERSION:'2.0.0',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true,
SOURCELINK_SUFFIX: '.txt'
};
</script>
<script type="text/javascript" src="../_static/jquery.js"></script>
<script type="text/javascript" src="../_static/underscore.js"></script>
<script type="text/javascript" src="../_static/doctools.js"></script>
<script type="text/javascript" src="../_static/language_data.js"></script>
<script type="text/javascript" src="https://cdn.jsdelivr.net/gh/mathjax/[email protected]/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>






<script type="text/javascript" src="../_static/js/theme.js"></script>




<script type="text/javascript">
jQuery(function () {
SphinxRtdTheme.StickyNav.enable();
});
</script>


<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=G-TRCMZL1FKK"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag(){dataLayer.push(arguments);}
gtag('js', new Date());
gtag('config', 'G-TRCMZL1FKK');
</script>

</body>
</html>

0 comments on commit 0f7d9bb

Please sign in to comment.