Use Sprocket GitHub Action in CI #64

	name: wdl-check

	on:
	push:
	pull_request:
	workflow_dispatch:

	jobs:
	miniwdl_check:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.9
	- name: Install miniwdl
	run: \|
	python -m pip install --upgrade pip
	pip3 install miniwdl
	- name: Run miniwdl
	run: \|
	EXITCODE=0
	echo "Checking WDL files using \`miniwdl check\`."
	files=$(find . -name '*.wdl')
	for file in $files; do
	echo " [*] $file [*]"
	miniwdl check "$file"
	EXITCODE=$(($? \|\| EXITCODE))
	done
	exit $EXITCODE
	womtool_check:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.9
	- name: Install Cromwell and Womtool
	run: \|
	conda update -n base -c defaults conda
	conda install -c conda-forge cromwell
	- name: Validate wdls with Womtool
	run: \|
	EXITCODE=0
	echo "Checking WDL files using \`womtool validate\`."
	files=$(find . -name '*.wdl')
	for file in $files; do
	echo " [*] $file [*]"
	$CONDA/bin/womtool validate "$file"
	EXITCODE=$(($? \|\| EXITCODE))
	done
	exit $EXITCODE
	sprocket-lint:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: Run sprocket
	uses: stjude-rust-labs/[email protected]
	with:
	lint: true
	deny-warnings: true
	deny-notes: true

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