Change tmp dir. #14
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name: wdl-check | |
on: | |
push: | |
pull_request: | |
workflow_dispatch: | |
jobs: | |
miniwdl_check: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.9 | |
- name: Install miniwdl | |
run: | | |
python -m pip install --upgrade pip | |
pip3 install miniwdl | |
- name: Run miniwdl | |
run: | | |
EXITCODE=0 | |
echo "Checking WDL files using \`miniwdl check\`." | |
files=$(find . -name '*.wdl') | |
for file in $files; do | |
echo " [***] $file [***]" | |
miniwdl check "$file" | |
EXITCODE=$(($? || EXITCODE)) | |
done | |
exit $EXITCODE | |
womtool_check: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.9 | |
- name: Install Cromwell and Womtool | |
run: | | |
conda update -n base -c defaults conda | |
conda install -c conda-forge cromwell | |
- name: Validate wdls with Womtool | |
run: | | |
EXITCODE=0 | |
echo "Checking WDL files using \`womtool validate\`." | |
files=$(find . -name '*.wdl') | |
for file in $files; do | |
echo " [***] $file [***]" | |
$CONDA/bin/womtool validate "$file" | |
EXITCODE=$(($? || EXITCODE)) | |
done | |
exit $EXITCODE | |
sprocket-lint: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Update Rust | |
run: rustup update nightly && rustup default nightly | |
- name: Install sprocket | |
run: cargo install sprocket | |
- name: Validate wdls with Sprocket | |
run: | | |
EXITCODE=0 | |
echo "Checking WDL files using \`sprocket lint\`." |