Skip to content

update documentation. #48

update documentation.

update documentation. #48

Workflow file for this run

name: wdl-check
on:
push:
pull_request:
workflow_dispatch:
jobs:
miniwdl_check:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Install miniwdl
run: |
python -m pip install --upgrade pip
pip3 install miniwdl
- name: Run miniwdl
run: |
EXITCODE=0
echo "Checking WDL files using \`miniwdl check\`."
files=$(find . -name '*.wdl')
for file in $files; do
echo " [***] $file [***]"
miniwdl check "$file"
EXITCODE=$(($? || EXITCODE))
done
exit $EXITCODE
womtool_check:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: 3.9
- name: Install Cromwell and Womtool
run: |
conda update -n base -c defaults conda
conda install -c conda-forge cromwell
- name: Validate wdls with Womtool
run: |
EXITCODE=0
echo "Checking WDL files using \`womtool validate\`."
files=$(find . -name '*.wdl')
for file in $files; do
echo " [***] $file [***]"
$CONDA/bin/womtool validate "$file"
EXITCODE=$(($? || EXITCODE))
done
exit $EXITCODE
sprocket-lint:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Update Rust
run: rustup update nightly && rustup default nightly
- name: Install sprocket
run: cargo install sprocket
- name: Validate wdls with Sprocket
run: |
EXITCODE=0
echo "Checking WDL files using \`sprocket lint\`."