Repositories list

• pipelines

  Public
  Shell

  •0•0•0•0•Updated Jan 13, 2020Jan 13, 2020

• binless

  Public
  Resolution-independent normalization of Hi-C data

  2•0•0•0•Updated Mar 27, 2019Mar 27, 2019

• hicfeatures

  Public
  Genomic features for Hi-C experiments

  R

  •0•0•0•0•Updated Oct 12, 2018Oct 12, 2018

• dryhic

  Public
  R

  •3•0•0•0•Updated May 25, 2018May 25, 2018

• TADbit

  Public
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models f…

  Python

  •

  GNU General Public License v3.0

  •61•1•0•0•Updated Feb 15, 2018Feb 15, 2018

• TADkit

  Public
  3D Genome Browser

  JavaScript

  •10•0•0•0•Updated Jan 18, 2018Jan 18, 2018

• bioinfo_course

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Nov 27, 2017Nov 27, 2017

• parallel_sequencing_lives

  Public
  Didactic dataset of the _"Parallel sequencing lives, or what makes large sequencing projects successful"_ manuscript.

  HTML

  •

  MIT License

  •1•3•0•0•Updated Nov 17, 2017Nov 17, 2017

• conseq

  Public
  HTML

  •0•2•0•0•Updated May 12, 2017May 12, 2017

• Chromosomal-Conformation-Course

  Public
  Bioinformatic material related to the course

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •3•3•0•0•Updated Apr 12, 2017Apr 12, 2017

• BSgenome.Dmelanogaster.flybase.dm3

  Public
  R

  •0•0•0•0•Updated Mar 21, 2017Mar 21, 2017