Generic Model Organism Database Project

All

100 repositories

Apollo3
Public
JBrowse 2 plugin for editing annotations on an Apollo server
TypeScript
•
Apache License 2.0
•4•7•54•10•Updated Nov 5, 2024Nov 5, 2024
jbrowse-components
Public
Source code for JBrowse 2, a modern React-based genome browser
visualization bioinformatics genomics jbrowse
TypeScript
•
Apache License 2.0
•62•208•319•23•Updated Nov 4, 2024Nov 4, 2024
jbrowse-plugin-protein3d
Public
3D protein structure visualizer in jbrowse 2 - WIP
TypeScript
•0•0•1•1•Updated Nov 4, 2024Nov 4, 2024
react-msaview
Public
A multiple sequence alignment viewer
TypeScript
•
MIT License
•1•18•22•0•Updated Nov 4, 2024Nov 4, 2024
jbrowse-react-linear-genome-view-vite-demo
Public
TypeScript
•1•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-linear-genome-view-rsbuild-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-linear-genome-view-nextjs-demo
Public
TypeScript
•1•1•1•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-linear-genome-view-farm-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-linear-genome-view-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-circular-genome-view-nextjs-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-circular-genome-view-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-app-vite-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-app-rsbuild-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-app-nextjs-demo
Public
TypeScript
•0•1•1•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-app-farm-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
jbrowse-react-app-cra5-demo
Public
TypeScript
•0•0•0•0•Updated Nov 3, 2024Nov 3, 2024
vcf-js
Public
High performance Variant Call Format (VCF) parser in pure JavaScript
TypeScript
•
MIT License
•5•23•4•4•Updated Oct 16, 2024Oct 16, 2024
cram-js
Public
Read CRAM v3 and v2 in node or in the browser
genomics
TypeScript
•
MIT License
•9•18•6•2•Updated Oct 14, 2024Oct 14, 2024
abortable-promise-cache
Public
add AbortController support to a cache of async requests
TypeScript
•
MIT License
•2•6•1•3•Updated Sep 24, 2024Sep 24, 2024
bbi-js
Public
Parser for bigwig and bigbed files
TypeScript
•
MIT License
•6•8•8•2•Updated Sep 24, 2024Sep 24, 2024
nclist-js
Public
Read JBrowse v1 nested containment list feature stores from modern JS
TypeScript
•
MIT License
•0•0•0•2•Updated Sep 21, 2024Sep 21, 2024
ixixx-js
Public
TypeScript
•
MIT License
•2•3•1•0•Updated Sep 19, 2024Sep 19, 2024
twobit-js
Public
Read .2bit files with pure JS. Works in node or webpack.
TypeScript
•
MIT License
•2•4•0•1•Updated Sep 12, 2024Sep 12, 2024
gff-js
Public
parse and format streams of GFF3, for node or webpack
genomics
TypeScript
•
MIT License
•6•11•1•2•Updated Sep 12, 2024Sep 12, 2024
trix-js
Public
Read UCSC Trix indexes in pure JavaScript
TypeScript
•
Apache License 2.0
•2•0•0•1•Updated Sep 10, 2024Sep 10, 2024
tabix-js
Public
Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser
TypeScript
•
MIT License
•5•14•2•0•Updated Sep 5, 2024Sep 5, 2024
jbrowse-react-linear-genome-view-vanillajs-demo
Public
JavaScript
•0•0•0•0•Updated Sep 4, 2024Sep 4, 2024
jbrowse-react-circular-genome-view-vanillajs-demo
Public
JavaScript
•0•0•0•0•Updated Sep 4, 2024Sep 4, 2024
bed-js
Public
A parser for the BED format including autoSql support
TypeScript
•1•5•1•1•Updated Sep 3, 2024Sep 3, 2024
jbrowse-plugin-msaview
Public
multiple sequence alignment browser plugin for JBrowse 2
TypeScript
•
Apache License 2.0
•0•4•4•0•Updated Aug 31, 2024Aug 31, 2024