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    39 repositories

    • NGCHM-R

      Public
      An R library for creating Next-Generation Clustered Heat Maps (NG-CHM)
      heatmapnci-itcrng-chm
      R
      •3•7•23•0•Updated Oct 15, 2024Oct 15, 2024

    • NG-CHM

      Public
      A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.
      nci-itcrheatmapng-chm
      JavaScript
      •
      GNU General Public License v2.0
      •9•10•131•0•Updated Oct 15, 2024Oct 15, 2024

    • NG-CHM-Artifacts

      Public
      JavaScript
      •
      GNU General Public License v2.0
      •1•0•0•0•Updated Sep 17, 2024Sep 17, 2024

    • tsvio

      Public
      R library for reading (subsets of) tsv files
      C
      •3•1•0•0•Updated Jul 24, 2024Jul 24, 2024

    • NGCHMDemoData

      Public
      Demo Data for NGCHM R package.
      R
      •1•0•0•0•Updated Jun 25, 2024Jun 25, 2024

    • rppaspace

      Public
      Reverse-Phase Protein Array Super Position and Concentration EvaluationThe RPPASPACE R package provides tools for the analysis of reverse-phase protein arrays (RPPAs), which are also known as "tissue lysate arrays" or simply "lysate arrays". The package's primary purpose is to input a set of quantification files representing dilution series of s…
      R
      •1•2•4•0•Updated Jun 20, 2024Jun 20, 2024

    • NGCHMSupportFiles

      Public
      Support files for NGCHM-R package
      R
      •2•0•0•0•Updated Jun 20, 2024Jun 20, 2024

    • BatchEffectsInterfaceStack

      Public
      Docker Compose Stack for running Batch Effects Interface
      HTML
      •
      Other
      •0•1•0•0•Updated May 31, 2024May 31, 2024

    • StandardizedData

      Public
      Code and packages for Standardized Data format for large scale studies.
      JavaScript
      •
      Other
      •0•1•0•0•Updated May 31, 2024May 31, 2024

    • BatchEffectsPackage

      Public
      The MBatch R package and Docker image are designed to help assess and correct for batch effects.
      R
      •
      Other
      •5•16•3•1•Updated May 31, 2024May 31, 2024

    • DataAPI

      Public
      DataAPI is a project for accesing and viewing the data and analysis (particulary of Batch Effects) of large datasets in Standardized Data format.
      JavaScript
      •
      Other
      •0•1•0•0•Updated May 31, 2024May 31, 2024

    • BatchEffectsPackageData

      Public
      Data Repo for BatchEffectsPackage
      HTML
      •0•1•0•0•Updated May 31, 2024May 31, 2024

    • MetaBatchOmicBrowser

      Public
      Web application for viewing metabolomics batch effects analyses, as seen at https://bioinformatics.mdanderson.org/MOB/
      JavaScript
      •
      Other
      •0•3•0•0•Updated May 31, 2024May 31, 2024

    • MetaBatchAnalyzer

      Public
      Turnkey Docker Stack system for evaluating and visualizing batch effects in metabolomics data, with the ability to download data from Metabolomics Workbench for analysis.
      HTML
      •
      Other
      •0•2•1•0•Updated May 31, 2024May 31, 2024

    • NG-CHM-Viewer-Source-Documentation

      Public
      JavaScript
      •0•0•0•0•Updated May 26, 2024May 26, 2024

    • ldap-jwt

      Public
      Lightweight node.js based web service that provides user authentication against LDAP server (Active Directory / Windows network) credentials and returns a JSON Web Token.
      JavaScript
      •
      MIT License
      •22•1•5•0•Updated Apr 16, 2024Apr 16, 2024

    • BCBBuildDocs

      Public
      Documentation for GitLab CI/CD with Docker
      Dockerfile
      •
      Other
      •0•1•0•0•Updated Mar 21, 2024Mar 21, 2024

    • SCLC_Subtyping

      Public
      R
      •1•1•0•0•Updated Jan 24, 2024Jan 24, 2024

    • MD-Anderson-Bioinformatics.r-universe.dev

      Public
      0•1•0•0•Updated Nov 14, 2023Nov 14, 2023

    • NG-CHM_GUI_BUILDER

      Public
      Simple graphical builder for Next-Generation Clustered Heat Maps
      JavaScript
      •
      GNU General Public License v2.0
      •1•1•44•0•Updated Oct 4, 2023Oct 4, 2023

    • Neoimmuno

      Public
      0•1•0•0•Updated Nov 28, 2022Nov 28, 2022

    • ScatterPlotPlugin3D

      Public
      An NG-CHM panel plugin for three-dimensional scatter plots.
      JavaScript
      •
      GNU General Public License v3.0
      •1•0•11•0•Updated Sep 21, 2021Sep 21, 2021

    • EGFR-Structure-Function-Nature-Manuscript

      Public
      R
      •2•2•0•0•Updated Aug 12, 2021Aug 12, 2021

    • GenePattern_NGCHM_Viewer

      Public
      A GenePattern Module to view NGCHM in GenePattern Notebook
      JavaScript
      •0•0•1•0•Updated Aug 4, 2021Aug 4, 2021

    • NG-CHM_Galaxy

      Public
      Next-Generation Clustered Heat Maps for Galaxy
      Python
      •1•0•11•1•Updated Apr 29, 2021Apr 29, 2021

    • acluster

      Public
      R package for approximate hierarchical clustering.
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 26, 2021Apr 26, 2021

    • ScatterPlotPlugin

      Public
      NG-CHM plugin for making 2-D scatter plots
      JavaScript
      •0•0•22•2•Updated Apr 21, 2021Apr 21, 2021

    • pathway-mapper

      Public
      An interactive and collaborative graphical curation tool for cancer pathways
      TypeScript
      •
      GNU Affero General Public License v3.0
      •28•0•10•0•Updated Apr 15, 2021Apr 15, 2021

    • SCLC-Cancer-Cell-Manuscript

      Public
      Python
      •6•3•0•0•Updated Nov 30, 2020Nov 30, 2020

    • MBatchImage

      Public archive
      Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage
      0•0•0•0•Updated Aug 13, 2020Aug 13, 2020