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    12 repositories

    • gemmicroflow

      Public
      MicroFlow Analyzer is a Nextflow-based pipeline for comprehensive microbiome FASTQ analysis. It integrates taxonomic profiling, functional annotation, Integrated Gene Catalog (IGC) analysis, and Metagenome-Assembled Genomes (MAGs) reconstruction.
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Nov 9, 2024Nov 9, 2024

    • dar

      Public
      dar: runs multiple differential abundance analysis methods and through a consensus strategy returns a set of differentially abundant features.
      feature-selectionrstatsbioconductormicrobiologymicrobiomebiomarker-discoveryphyloseqdifferential-abundance-analysis
      R
      •
      Other
      •0•1•0•1•Updated Oct 16, 2024Oct 16, 2024

    • microfunk

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•3•2•Updated Jul 15, 2024Jul 15, 2024

    • Lamivudine_mice_RNAseq

      Public
      0•0•0•0•Updated Jan 22, 2024Jan 22, 2024

    • mistralDP

      Public
      R
      •
      Other
      •0•0•4•0•Updated Nov 9, 2023Nov 9, 2023

    • modules

      Public
      Repository to host tool-specific module files for the Nextflow DSL2 community!
      Nextflow
      •
      MIT License
      •719•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • ivihome

      Public
      MISTRAL Data Portal
      R
      •
      Other
      •0•0•0•0•Updated Aug 22, 2023Aug 22, 2023

    • test-datasets

      Public
      Test data to be used for automated testing with the nf-core pipelines
      MIT License
      •353•0•0•0•Updated Jan 30, 2023Jan 30, 2023

    • 2022_MedCars

      Public
      HTML
      •0•0•0•0•Updated Oct 10, 2022Oct 10, 2022

    • HLA_Analysis

      Public
      R
      •0•0•0•0•Updated Apr 1, 2022Apr 1, 2022

    • TTrichiura_Tubulin

      Public
      Pipeline to analyze beta-tubulin gene of Trichuris Trichiura, and call nucleotide and amino acid mutations on coding and non-coding regions, separately
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Oct 8, 2020Oct 8, 2020

    • ViCroSeq

      Public
      A tool for the removal of Viral Cross-Contamination in Sequencing - ViCroSeq
      Shell
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 16, 2019Oct 16, 2019