Repositories list

• PEDSpace

  Public
  An implementation of the DSpace open-source repository package for PEDSnet.

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•5•0•Updated Dec 24, 2024Dec 24, 2024

• dqa_library

  Public
  PEDSnet Network Data Quality Checks

  R

  •0•1•0•0•Updated Dec 23, 2024Dec 23, 2024

• NES

  Public
  Code and codesets used to create the cohort of neonates with neonatal enteroviral sepsis and assess their outcomes.

  0•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• dqa_shiny

  Public
  Code for generating an R shiny dashboard displaying data quality check output

  R

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Dec 16, 2024Dec 16, 2024

• dqa_processing

  Public
  Component of the PEDSnet network data quality pipeline that reshapes and performs computations on the output from dqa_library

  R

  •

  Mozilla Public License 2.0

  •0•1•0•0•Updated Dec 16, 2024Dec 16, 2024

• RPresto

  Public
  DBI-based adapter for Presto for the statistical programming language R.

  R

  •

  Other

  •44•0•0•0•Updated Nov 15, 2024Nov 15, 2024

• dupilumab_t1

  Public
  Functions and codesets to examine T1 disease outcomes in patients with dupilumab

  R

  •

  Mozilla Public License 2.0

  •0•0•0•0•Updated Nov 11, 2024Nov 11, 2024

• Data_Models_Public

  Public
  The home for usage standards for the network's data models: PEDSnet/OMOP and PCORnet for PEDSnet.

  4•7•0•0•Updated Nov 8, 2024Nov 8, 2024

• pedsnetdcc

  Public
  CLI tool for PEDSnet data coordinating center ETL tasks

  Python

  •

  Other

  •0•0•20•6•Updated Oct 14, 2024Oct 14, 2024

• docker-dspace-handle-server

  Public
  Containerized DSpace Handle Server

  HTML

  •2•0•0•0•Updated Sep 28, 2024Sep 28, 2024

• pcornetcdm_to_pedsnetcdm

  Public
  PLpgSQL

  •0•0•1•0•Updated Sep 17, 2024Sep 17, 2024

• recover_pasc_subphenotype_manuscript

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• ssdqa_functions

  Public
  This repository contains the functions that allow users to execute checks selected and defined in the SSDQA Shiny app interface

  R

  •0•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• I2B2_ON_PCORNET_CDM

  Public
  Python

  •1•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• pcornet_to_omop_and_i2b2_views

  Public
  Repository for SQL used to create OMOP and I2B2 views given a PCORnet CDM loaded to Snowflake

  PLSQL

  •0•1•0•0•Updated Aug 5, 2024Aug 5, 2024

• tide

  Public
  Java

  •14•1•0•0•Updated Jul 23, 2024Jul 23, 2024

• infomodels_database

  Public
  Package for creating and dropping tables, indexes, and constraints, and loading data

  Go

  •1•0•0•0•Updated May 19, 2024May 19, 2024

• PEDSnet-Lessidentify

  Public
  Simple tools to reduce privacy risk in individual-level datasets

  Perl

  •

  Other

  •0•0•0•0•Updated May 17, 2024May 17, 2024

• Variable-Dictionary

  Public
  (Under Development) The repository for variable definitions and codesets for PEDSnet studies

  HTML

  •1•4•0•1•Updated May 6, 2024May 6, 2024

• acg_2024

  Public
  Jupyter Notebook

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• asthma_feasibility

  Public
  0•0•0•0•Updated Mar 26, 2024Mar 26, 2024

• pedsnetcdm_to_pcornetcdm

  Public
  SQL code to transform data from PEDSnet CDM to PCORnet CDM.

  PLpgSQL

  •4•7•4•51•Updated Jan 30, 2024Jan 30, 2024

• r_docker_demo

  Public
  A demo to build a docker container and connect to database

  Dockerfile

  •0•0•0•0•Updated Dec 26, 2023Dec 26, 2023

• airflow_pedsnetcdm_to_pcornetcdm

  Public
  Migration of Old pedsnetcdm_to_pcornetcdm into Airflow utilizing spark

  Python

  •0•0•0•0•Updated Nov 29, 2023Nov 29, 2023

• tide_orchestration

  Public
  Python

  •1•1•0•0•Updated Oct 18, 2023Oct 18, 2023

• degauss_to_pcornet

  Public
  modeling degauss output csv of FIPS codes into the PCORnet Data Model

  Python

  •0•0•0•0•Updated Aug 15, 2023Aug 15, 2023

• Subspecialty_Analysis

  Public
  Determine the proportion of study eligible children between the ages of 0 and 20 who used pediatric subspeciality care at least once in a given calendar year between 2010 and 2021 in any care setting (i.e., in an inpatient hospital, outpatient, emergency department, or community-based practice care setting), stratified by age group and sex.

  R

  •0•0•0•0•Updated Feb 24, 2023Feb 24, 2023

• PASC

  Public
  R

  •0•0•0•0•Updated Feb 9, 2023Feb 9, 2023

• pasc_ml_phenotype

  Public
  R

  •

  GNU General Public License v2.0

  •0•0•0•0•Updated Feb 9, 2023Feb 9, 2023

• ckd_progression

  Public
  Codesets for study "Using Electronic Health Record Data to Evaluate Kidney Function Decline in Children with Chronic Kidney Disease"

  0•0•0•0•Updated Oct 18, 2022Oct 18, 2022