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@PriceLab Hood-Price Lab for Systems Biomedicine

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    133 repositories

    • DOCKET

      Public
      The Dataset Overview, Comparison and Knowledge Extraction Tool
      Python
      •2•2•4•1•Updated Sep 6, 2024Sep 6, 2024

    • ghdb

      Public
      access to a local PostgreSQL version of GeneHancer
      R
      •1•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • geneReg-2021

      Public
      source data and database fill code related to gene regulation: TF ChIP, RNA-binding, miRNA
      Shell
      •
      Apache License 2.0
      •0•0•0•0•Updated May 21, 2024May 21, 2024

    • Aging_Workshop_24

      Public
      Course materials for the Systems Biology Of Aging Virtual Workshop 24
      HTML
      •
      Apache License 2.0
      •3•8•0•0•Updated May 9, 2024May 9, 2024

    • Multiomics-BMI

      Public
      This repository includes the code used in our multiomics BMI study.
      Jupyter Notebook
      •0•14•0•0•Updated Jul 6, 2023Jul 6, 2023

    • lcApps

      Public
      webapps for the longevity consortium
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 26, 2023Jun 26, 2023

    • bigFimo

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Jun 16, 2023Jun 16, 2023

    • trena

      Public
      R
      •0•1•0•0•Updated Mar 13, 2023Mar 13, 2023

    • BioShiny

      Public
      R/Shiny widgets for molecular biology
      R
      •
      Apache License 2.0
      •0•1•0•0•Updated Jan 13, 2023Jan 13, 2023

    • translator-bigquery-api

      Public
      This is the API for the translator biqquery project
      Python
      •2•1•1•7•Updated Dec 8, 2022Dec 8, 2022

    • endophenotypeExplorer

      Public
      tools to explore associations between eQTLs, variants, gene expression and gene regulation
      R
      •
      MIT License
      •0•0•0•0•Updated Sep 7, 2022Sep 7, 2022

    • nooa

      Public
      N-of-1 analyzer: an exploration
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 26, 2022Aug 26, 2022

    • TrenaMultiScore

      Public
      create and explore TFBS/targetGene data assembled from many sources
      R
      •
      MIT License
      •1•0•0•0•Updated Aug 19, 2022Aug 19, 2022

    • TrenaProjectAD

      Public
      R
      •0•0•0•0•Updated Jul 4, 2022Jul 4, 2022

    • TrenaProjectHG38

      Public
      data and functions with which to build (roughly) tissue-specific trena models
      R
      •0•0•0•0•Updated Jul 4, 2022Jul 4, 2022

    • MotifDb

      Public
      This is a space for developing the MotifDb Package. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/MotifDb.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=MotifDb.
      R
      •
      Other
      •3•2•5•1•Updated Mar 4, 2022Mar 4, 2022

    • TrenaProjectErythropoiesis

      Public
      transcriptional control during erythropoiesis
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 7, 2022Jan 7, 2022

    • Statins_microbiome_project

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Dec 21, 2021Dec 21, 2021

    • fimoService

      Public
      The meme suite's fimo (find motif) as a microservice, written in python, with R and python clients
      HTML
      •
      MIT License
      •1•6•0•0•Updated Dec 4, 2021Dec 4, 2021

    • kats

      Public
      a variety of kernel association tests
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 5, 2021Oct 5, 2021

    • WGCNA-Metabolon-Code

      Public
      R
      •1•1•0•0•Updated Sep 28, 2021Sep 28, 2021

    • TrenaProjectMouseBrain

      Public
      Data and methods for building gene regulatory models of mouse brain
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 20, 2021Sep 20, 2021

    • TrenaProjectADMouse

      Public
      explorations related to the Jackson Lab AD mouse
      R
      •
      Apache License 2.0
      •0•0•0•0•Updated Jun 23, 2021Jun 23, 2021

    • CHD1

      Public
      explore the regulation of CHD1 in hematopoiesis
      R
      •0•0•0•0•Updated Apr 3, 2021Apr 3, 2021

    • Pareto_Paper

      Public
      C
      •1•1•0•0•Updated Mar 22, 2021Mar 22, 2021

    • trrust

      Public
      TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
      0•0•0•0•Updated Feb 24, 2021Feb 24, 2021

    • AgingMicrobiome

      Public
      Aging Microbiome paper Wilmanski et. al.
      5•8•0•0•Updated Feb 24, 2021Feb 24, 2021

    • loganCenterHistory

      Public
      analysis and visualization for Jen Eklund
      Apache License 2.0
      •0•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • kg-reactome

      Public
      transform reactome into entities and relationships, ready for import into knowledge graphs
      R
      •
      MIT License
      •0•0•0•0•Updated Jan 21, 2021Jan 21, 2021

    • kg-explorations

      Public
      some projects using graphs assembled from various sources
      Makefile
      •
      MIT License
      •0•0•0•0•Updated Jan 9, 2021Jan 9, 2021