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    17 repositories

    • ARCADE

      Public
      ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments
      Java
      •
      Other
      •1•9•41•5•Updated Oct 18, 2024Oct 18, 2024

    • container-collection

      Public
      Collection of tasks for running containerized models
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•3•0•0•Updated Sep 25, 2024Sep 25, 2024

    • arcade-collection

      Public
      Collection of tasks for working with ARCADE
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Sep 25, 2024Sep 25, 2024

    • emulation

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 15, 2024Jul 15, 2024

    • emulation_analysis

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Mar 14, 2024Mar 14, 2024

    • arcade_modeling_choices

      Public archive
      Supporting code for doi:10.1371/journal.pcbi.1011917
      HTML
      •0•2•0•0•Updated Mar 11, 2024Mar 11, 2024

    • parameter-estimation-framework

      Public
      Python
      •0•0•0•0•Updated Mar 11, 2024Mar 11, 2024

    • arcade-xml-generator

      Public
      Python
      •1•0•0•1•Updated Jan 2, 2024Jan 2, 2024

    • CARCADE

      Public
      CAR T-cell ARCADE Biological Modeling Framework
      Java
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jul 8, 2022Jul 8, 2022

    • carcade_mapping_design_space

      Public
      Scripts to automatically analyze and plot CART ABM data
      HTML
      •0•0•0•0•Updated Jun 29, 2022Jun 29, 2022

    • arcade_emergent_behavior

      Public archive
      Supporting code for doi:10.3389/fbioe.2020.00249
      HTML
      •0•1•0•0•Updated Jul 19, 2021Jul 19, 2021

    • arcade_vascular_dynamics

      Public archive
      Supporting code for doi:10.1016/j.cels.2021.05.007
      HTML
      •0•1•0•0•Updated Jul 14, 2021Jul 14, 2021

    • networkinference

      Public archive
      Network inference performance complexity: a consequence of topological, experimental, and algorithmic determinants
      MATLAB
      •2•0•0•0•Updated Jan 11, 2021Jan 11, 2021

    • peptidemodel

      Public archive
      Modulating and evaluating receptor promiscuity through directed evolution and modeling
      MATLAB
      •0•0•0•0•Updated Jan 11, 2021Jan 11, 2021

    • DUETT

      Public
      Detection of Unknown Events with Tunable Thresholds
      R
      •1•1•0•0•Updated Jan 17, 2020Jan 17, 2020

    • DiffExPy

      Public
      Differential Expression in Python
      0•0•0•0•Updated Apr 23, 2019Apr 23, 2019

    • SWING

      Public
      Sliding Window Inference for Network Generation
      Python
      •12•10•14•0•Updated Feb 14, 2018Feb 14, 2018