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@bm2-lab Biological and Medical Big data Mining Lab

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    49 repositories

    • CRISPR-viva

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • CausCell

      Public
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Oct 19, 2024Oct 19, 2024

    • SCMMI_Benchmark

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Oct 7, 2024Oct 7, 2024

    • SCMMIB-reproducibility

      Public
      R
      •
      MIT License
      •0•0•0•0•Updated Oct 5, 2024Oct 5, 2024

    • SCMMIB_pipeline

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Oct 4, 2024Oct 4, 2024

    • scMVP

      Public
      Python
      •
      MIT License
      •11•28•5•0•Updated Sep 21, 2024Sep 21, 2024

    • PathoTME

      Public
      Genomics-guided Representation Learning for Pathologic Pan-cancer Tumor Microenvironment Subtype Prediction (MICCAI 2024 oral)
      Python
      •1•2•0•0•Updated Sep 15, 2024Sep 15, 2024

    • PerturBase

      Public
      The most comprehensive database designed for the analysis and visualization of single cell perturbation data
      Python
      •
      GNU General Public License v3.0
      •1•2•1•0•Updated Sep 10, 2024Sep 10, 2024

    • SpaDo

      Public
      Multi-slice Spatial Transcriptome Domain Analysis.
      spatial-transcriptomicsmulti-slicespatial-domains
      R
      •
      GNU General Public License v2.0
      •1•8•0•0•Updated Sep 4, 2024Sep 4, 2024

    • STAMP

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•4•1•0•Updated Aug 30, 2024Aug 30, 2024

    • SpaTME

      Public
      R
      •
      Other
      •0•1•0•0•Updated Aug 5, 2024Aug 5, 2024

    • AlphaTherapy

      Public
      Rational design of sequential drug treatments for tumors
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 3, 2024Jul 3, 2024

    • TCRBagger

      Public
      TCRBagger
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Jun 23, 2024Jun 23, 2024

    • UniTCR

      Public
      Python
      •
      MIT License
      •0•6•0•0•Updated May 11, 2024May 11, 2024

    • Inter3d

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated May 11, 2024May 11, 2024

    • MUSIC

      Public
      model-based understanding of single-cell CRISPR screening
      topic-modeling-analysissingle-cell-crispr-screening
      R
      •
      Apache License 2.0
      •10•23•6•1•Updated Apr 18, 2024Apr 18, 2024

    • comboSC

      Public
      Personalized tumor combination therapy prediction based on single cell RNA-seq
      R
      •2•5•1•0•Updated Dec 4, 2023Dec 4, 2023

    • PanPep

      Public
      Python
      •
      GNU General Public License v3.0
      •9•44•4•0•Updated Dec 3, 2023Dec 3, 2023

    • CRISOT

      Public
      Python
      •
      Other
      •3•6•1•0•Updated Nov 20, 2023Nov 20, 2023

    • FedTherapy

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Oct 31, 2023Oct 31, 2023

    • scLearn

      Public
      scLearn：Learning for single cell assignment
      assignmentmetric-learningsingle-cell-rna-seq
      R
      •8•34•1•0•Updated Mar 28, 2023Mar 28, 2023

    • DeepCRISPR

      Public
      Python
      •
      Apache License 2.0
      •31•57•5•0•Updated Feb 13, 2023Feb 13, 2023

    • BIONIC-evals

      Public
      Evaluation library for BIONIC
      Python
      •3•0•0•0•Updated Nov 1, 2022Nov 1, 2022

    • scPrivacy

      Public
      Python
      •
      MIT License
      •0•2•0•0•Updated Sep 23, 2022Sep 23, 2022

    • DrSim

      Public
      A general learning-based framework for drug annotation and repositioning based on transcriptional profile
      Python
      •
      GNU General Public License v3.0
      •0•6•0•0•Updated Jun 28, 2022Jun 28, 2022

    • VISPR

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated May 23, 2022May 23, 2022

    • comboSC-mut

      Public
      R
      •2•1•0•1•Updated May 4, 2022May 4, 2022

    • mtSC

      Public
      A multitask deep metric learning-based framework for single cell assignment based on multiple references
      metric-learningmultitask-learningmultiple-referencessingle-cell-assignment
      Python
      •
      MIT License
      •3•3•1•0•Updated Mar 29, 2022Mar 29, 2022

    • pTuneos

      Public
      pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
      immunotherapyneoantigen
      Python
      •
      MIT License
      •8•34•8•0•Updated Nov 14, 2021Nov 14, 2021

    • X-MOL

      Public
      Python
      •
      Apache License 2.0
      •10•31•2•0•Updated Oct 8, 2021Oct 8, 2021