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    19 repositories

    • scwlch

      Public
      Squelch bugs with this suite for creating CWL Checker workflows
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•3•Updated Apr 12, 2023Apr 12, 2023

    • pinr

      Public
      Python
      •
      MIT License
      •0•1•0•0•Updated Jan 28, 2023Jan 28, 2023

    • hearth

      Public
      An inviting place for interoperable reporting of medical imaging data
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•0•Updated Oct 30, 2021Oct 30, 2021

    • fs2dicom

      Public
      Convert FreeSurfer outputs to DICOM
      hacktoberfest
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•9•0•Updated Oct 29, 2021Oct 29, 2021

    • rend

      Public
      Reproducible Exploration of Neuroimaging Data
      jupyterreproducible-researchneuroimaginghacktoberfestinteractive-visualizations
      Jupyter Notebook
      •
      MIT License
      •3•1•0•0•Updated Oct 18, 2021Oct 18, 2021

    • fs6-cloud

      Public
      Run FreeSurfer 6.0 in the cloud
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •2•6•0•0•Updated Apr 6, 2021Apr 6, 2021

    • batchtools

      Public
      Command line tool to process subjects with re:THINQ using AWS Batch
      Python
      •
      Other
      •1•0•1•0•Updated Feb 19, 2021Feb 19, 2021

    • dcm-anon

      Public
      Dicom anonymizer that plays nicely with: 1) THINQ/reTHINQ, 2) AutoRegister, 3) FreeSurfer
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • cstore-relay

      Public
      Simply relay for DICOM C-STORE commands in a docker container
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •1•0•0•0•Updated Feb 19, 2021Feb 19, 2021

    • med-dev-refs

      Public
      A collection of Regulatory, Guidance and Standards documents relevant for the development of Software-Only Medical Devices
      Creative Commons Zero v1.0 Universal
      •2•5•0•0•Updated Feb 10, 2021Feb 10, 2021

    • surfboard

      Public
      Interactive FreeSurfer Quality Control Dashboard
      hacktoberfest
      MIT License
      •0•0•0•0•Updated Oct 2, 2020Oct 2, 2020

    • fs-docker

      Public
      Dockerfiles for FreeSurfer
      Dockerfile
      •
      BSD 3-Clause "New" or "Revised" License
      •4•2•2•0•Updated Sep 25, 2019Sep 25, 2019

    • DICOM4QI

      Public
      DICOM4QI is an open connectathon with the purpose of evaluating interoperability of the image analysis tools and workstations, applied to exchange of the quantitative image analysis results using DICOM standard: https://dicom4qi.readthedocs.io/
      10•0•0•0•Updated Nov 28, 2018Nov 28, 2018

    • fs-cwl

      Public
      Common workflow language wrappers and workflow for FreeSurfer
      Common Workflow Language
      •4•1•1•1•Updated Oct 15, 2018Oct 15, 2018

    • pl-fs6-recon-all

      Public
      Chris app plugin for FreeSurfer 6.0 recon-all
      Python
      •
      MIT License
      •2•0•0•0•Updated Mar 29, 2018Mar 29, 2018

    • freesurfer

      Public
      The official Freesurfer repository maintained by LCN
      C
      •
      Other
      •246•0•0•0•Updated Jun 21, 2017Jun 21, 2017

    • mindcontrol

      Public
      MindControl is an app for quality control of neuroimaging pipeline outputs. Demo:
      JavaScript
      •
      Other
      •25•0•0•0•Updated Apr 18, 2017Apr 18, 2017

    • mindcontrol_docs

      Public
      Documentation for setting up your own mindcontrol instance
      Jupyter Notebook
      •7•0•0•0•Updated Apr 5, 2017Apr 5, 2017

    • neuroimage-tensorflow

      Public
      This Repository contains development framework for using tensorflow in a neuroimaging analyses
      Python
      •6•10•1•0•Updated Mar 7, 2017Mar 7, 2017