Kleinman Lab

All

11 repositories

CoRAL
Public
R
•
Apache License 2.0
•0•1•0•0•Updated Nov 8, 2024Nov 8, 2024
NB-FOXR2
Public
Analysis for "FOXR2 targets LHX6+/DLX+ neural lineages to drive CNS neuroblastoma" (Jessa*, De Cola*, Chandarana*, et al, Cancer Research, 2024)
cancer reproducible-research r-markdown reproducible-paper single-cell-omics multiomics
HTML
•
GNU General Public License v3.0
•0•1•0•0•Updated Nov 5, 2024Nov 5, 2024
HGG-oncohistones
Public
Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)
cancer reproducible-research r-markdown cancer-genomics single-cell functional-genomics epigenomics reproducible-paper brain-development
HTML
•
GNU General Public License v3.0
•2•7•0•0•Updated Oct 17, 2024Oct 17, 2024
scCoAnnotate
Public archive
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
reproducible-research single-cell cell-type-classification single-cell-rna-seq snakemake-workflow
R
•
Apache License 2.0
•1•3•0•0•Updated Sep 30, 2024Sep 30, 2024
braindex
Public
A web portal for exploring scRNAseq data in the developing brain, including our in-house atlas of the E10-P6 forebrain and brainstem
R
•
GNU General Public License v3.0
•1•0•19•0•Updated Nov 2, 2023Nov 2, 2023
G34-gliomas
Public
Cell-of-origin analysis for "Histone H3.3G34-mutant interneuron progenitors co-opt PDGFRA for gliomagenesis" (Chen*, Deshmukh*, Jessa*, Hadjadj*, et al, Cell, 2020)
rna-seq reproducible-research cancer-genomics reproducible-paper
HTML
•0•0•0•0•Updated Sep 16, 2022Sep 16, 2022
sandbox
Public
A sandbox to test our workflow
R
•
GNU General Public License v3.0
•0•0•7•1•Updated Sep 21, 2020Sep 21, 2020
cytobox
Public
A toolbox for analysis and highly-customizable visualization of single cell data
R
•
GNU General Public License v3.0
•2•4•1•0•Updated Aug 6, 2020Aug 6, 2020
Parameterized_report
Public
Parameterized report and interactive plot introduction and demo
HTML
•0•0•0•0•Updated Jun 19, 2020Jun 19, 2020
chromswitch-analysis
Public
Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)
R
•1•0•0•0•Updated May 24, 2020May 24, 2020
chromswitch
Public
An R/Bioconductor package for detecting chromatin state switches
R
•
Other
•1•0•0•0•Updated Apr 13, 2020Apr 13, 2020