Repositories list

• data-portal

  Public
  GHGA Data Portal v2

  JavaScript

  •

  Other

  •0•0•0•1•Updated Nov 18, 2024Nov 18, 2024

• ghga-datasteward-kit

  Public
  GHGA-internal scripts to be used by data stewards.

  Python

  •

  Apache License 2.0

  •0•1•0•1•Updated Nov 18, 2024Nov 18, 2024

• data-portal-ui

  Public
  GHGA Data Portal v1

  TypeScript

  •

  Apache License 2.0

  •0•0•0•1•Updated Nov 18, 2024Nov 18, 2024

• epic-docs

  Public
  Documentation and plans for service development milestones

  Shell

  •

  Apache License 2.0

  •1•0•0•1•Updated Nov 18, 2024Nov 18, 2024

• file-services-backend

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•1•Updated Nov 18, 2024Nov 18, 2024

• charts

  Public
  Smarty

  •0•0•0•0•Updated Nov 18, 2024Nov 18, 2024

• metldata

  Public
  A framework for handling metadata based on ETL, CQRS, and event sourcing.

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• hexkit

  Public
  A chassis library for building domain-focused, infrastructure-agnostic and event-driven microservices in Python.

  Python

  •

  Apache License 2.0

  •0•5•0•1•Updated Nov 15, 2024Nov 15, 2024

• docs.ghga.de

  Public
  GHGA User Documentation

  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Nov 15, 2024Nov 15, 2024

• mass

  Public
  A service for searching metadata artifacts and filtering results.

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• access-request-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• work-package-service

  Public
  Service that handles work packages for the CLI client

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• nf-snvcalling

  Public
  a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

  somatic-variantssomatic-mutationssnv+ 5snv-annotationdkfzghgasnv-callodcf

  Python

  •

  MIT License

  •0•1•4•0•Updated Nov 12, 2024Nov 12, 2024

• nf-platypusindelcalling

  Public
  This page is reserved for NextFlow based Indell Calling Workflow (with Platypus) from DKFZ

  workflowpipelineannotation+ 11nextflowsomatic-variantsannotationsvariant-callingsomatic-mutationsplatypusnextflow-pipeline+ 4

  Python

  •

  MIT License

  •0•1•4•0•Updated Nov 12, 2024Nov 12, 2024

• ghga-metadata-schema

  Public
  Metadata schema for the German Human Genome-Phenome Archive (GHGA)

  metadata-schemalinkmlghga+ 1fega

  Python

  •

  Apache License 2.0

  •4•13•4•5•Updated Nov 8, 2024Nov 8, 2024

• well-known-value-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 8, 2024Nov 8, 2024

• ghga-service-commons

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• state-management-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• auth-service

  Public
  Authentication service for the GHGA data portal used by the API gateway via the ExtAuth protocol

  Python

  •

  Apache License 2.0

  •0•2•0•2•Updated Oct 22, 2024Oct 22, 2024

• homogeneous-data-processing

  Public
  Jupyter Notebook

  •1•1•3•0•Updated Oct 18, 2024Oct 18, 2024

• dataset-information-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• ghga-connector

  Public
  CLI - Client to perform up- and download operations to and from a local ghga instance

  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Oct 1, 2024Oct 1, 2024

• notification-orchestration-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

• microservice-repository-template

  Public template
  A template for Python-based microservice repositories with continuous update delivery.

  Python

  •

  Apache License 2.0

  •2•0•0•0•Updated Sep 13, 2024Sep 13, 2024

• notification-service

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•1•Updated Sep 6, 2024Sep 6, 2024

• ghga-transpiler

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Sep 3, 2024Sep 3, 2024

• gh-action-ci

  Public
  Common steps executed within CI pipelines of GHGA.

  Dockerfile

  •

  Apache License 2.0

  •0•0•0•1•Updated Aug 13, 2024Aug 13, 2024

• beacon2-ri-api

  Public
  This is the v2 Beacon Reference Implementation deployed at GHGA. For the base implementation please see https://github.com/EGA-archive/beacon2-ri-api/

  JavaScript

  •

  Apache License 2.0

  •38•0•0•0•Updated Jul 31, 2024Jul 31, 2024

• example-data

  Public
  GHGA Example Data

  0•0•0•0•Updated Jul 26, 2024Jul 26, 2024

• gh-action-common

  Public
  Apache License 2.0

  •0•0•0•1•Updated Jul 10, 2024Jul 10, 2024