Systems Biology at WV lab

All

13 repositories

sysbiome-serve
Public
R
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Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
SYSMIOME
Public
SYSMIOME digital platform.
MIT License
•0•0•0•0•Updated Nov 21, 2024Nov 21, 2024
libmiome
Public
Secondary pipeline
Apache License 2.0
•0•0•0•0•Updated Aug 13, 2024Aug 13, 2024
Cordyceps_militaris-tiGSMM
Public
MATLAB
•0•0•0•0•Updated Feb 1, 2024Feb 1, 2024
itsbreeze
Public
ITS analysis pipeline written in nextflow
Nextflow
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MIT License
•0•0•0•0•Updated Aug 29, 2023Aug 29, 2023
minbreeze
Public
16s metabolic pipeline written in nextflow.
R
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MIT License
•0•0•0•0•Updated Aug 29, 2023Aug 29, 2023
sysbiome-dash
Public
R
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BSD 2-Clause "Simplified" License
•0•0•0•0•Updated Jun 29, 2023Jun 29, 2023
sysbiome-tower
Public
Go
•0•0•0•0•Updated Feb 13, 2023Feb 13, 2023
meta-gene
Public
The meta‐gene catalogue of Thai gut microbiome
GNU General Public License v3.0
•0•0•0•0•Updated Sep 9, 2022Sep 9, 2022
Cordyceps_militaris-GSMM
Public
The enhanced genome-scale metabolic model of Cordyceps militaris, iPC1469 through metabolic footprint and transcriptome profiles
MATLAB
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Creative Commons Attribution 4.0 International
•0•0•1•0•Updated Jul 12, 2022Jul 12, 2022
Limosilactobacillus_reuteri_KUB_AC5-GSMM
Public
A high quality genome-scale metabolic model of probiotic L. reuteri KUB-AC5
MATLAB
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GNU General Public License v3.0
•0•0•0•0•Updated Feb 7, 2022Feb 7, 2022
Cordyceps_militaris-GEM
Public
Genome-scale metabolic model of Cordyceps militaris
metabolic-engineering genome-scale-models
MATLAB
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Creative Commons Attribution 4.0 International
•1•1•0•0•Updated Apr 19, 2020Apr 19, 2020
aspergillus_model
Public
Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
metabolic-network flux-balance-analysis metabolic-model reconstructed-metabolic-network aspergillus-oryzae
MATLAB
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MIT License
•0•2•0•0•Updated Mar 29, 2019Mar 29, 2019