unit testing

pachterlab · Aug 9, 2023 · 65f2000 · 65f2000
1 parent 3b80ee1
commit 65f2000
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/kb_python/count.py b/kb_python/count.py
@@ -974,7 +974,8 @@ def filter_with_bustools(
                     counts_dir,
                     count_result['mtx'],
                     count_result['barcodes'],
-                    batch_barcodes_path=count_result['batch_barcodes'],
+                    batch_barcodes_path=count_result['batch_barcodes']
+                    if 'batch_barcodes' in count_result else None,
                     genes_path=count_result.get('genes'),
                     t2g_path=t2g_path,
                     ec_path=count_result.get('ec'),
@@ -2190,6 +2191,7 @@ def update_results_with_suffix(current_results, new_results, suffix):
                     ],
                     [
                         filtered_results[prefix]['batch_barcodes']
+                        if batch_barcodes else None
                         for prefix in prefixes
                     ],
                     genes_paths=[

diff --git a/tests/fixtures/quant/index.saved b/tests/fixtures/quant/index.saved