Allow specifying -i NONE to skip kallisto index creation

pachterlab · Oct 21, 2024 · c3665bb · c3665bb
1 parent 9f5bbc5
commit c3665bb
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/kb_python/ref.py b/kb_python/ref.py
@@ -627,7 +627,7 @@ def ref(
 
         if len(fasta_paths) > 1:
             raise RefError((
-                'Option `--a` does not support multiple FASTA files as input'
+                'Option `--aa` does not support multiple FASTA files as input'
                 'while no GTF file(s) provided'
             ))
         else:
@@ -668,6 +668,8 @@ def ref(
     if not glob.glob(f'{index_path}*') or overwrite:
         t2g_result = create_t2g_from_fasta(cdna_path, t2g_path, aa_flag=aa)
         results.update(t2g_result)
+        if index_path.upper() == "NONE":
+            return results
 
         if k and k != 31:
             logger.warning(