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more explicit doc
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AndreaGuarracino committed Sep 29, 2023
1 parent 1478789 commit d83b8e1
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2 changes: 1 addition & 1 deletion partition-before-pggb
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Expand Up @@ -203,7 +203,7 @@ if [ $show_help == true ]; then
echo " -K, --mash-kmer N kmer size for mapping [default: "$MASH_KMER"]"
echo " -F, --mash-kmer-thres N ignore the top % most-frequent kmers [default: "$MASH_KMER_THRES"]"
echo " -Y, --exclude-delim C skip mappings when the query and target have the same"
echo " prefix before the last occurrence of the given character C [default: #]"
echo " prefix before the last occurrence of the given character C [default: #, assuming PanSN-spec]"
echo " [seqwish]"
echo " -k, --min-match-len N filter exact matches below this length [default: "$MIN_MATCH_LENGTH"]"
echo " -f, --sparse-factor N keep this randomly selected fraction of input matches [default: no sparsification]"
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