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National Microbiology Laboratory

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  1. mob-suite mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    Python 119 31

  2. staramr staramr Public

    Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

    Python 117 26

  3. ecoli_serotyping ecoli_serotyping Public

    In silico prediction of E. coli serotype

    Python 49 11

  4. irida irida Public

    Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

    Java 40 31

  5. refseq_masher refseq_masher Public

    Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

    Jupyter Notebook 39 4

  6. biohansel biohansel Public

    Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes

    Python 26 7

Repositories

Showing 10 of 139 repositories
  • irida-next Public

    IRIDA Next

    phac-nml/irida-next’s past year of commit activity
    Ruby 8 Apache-2.0 3 12 10 Updated Oct 15, 2024
  • gasnomenclature Public

    Nomenclature assignment pipeline

    phac-nml/gasnomenclature’s past year of commit activity
    Nextflow 0 MIT 0 1 2 Updated Oct 15, 2024
  • neptune Public

    Neptune: Genomic Signature Discovery

    phac-nml/neptune’s past year of commit activity
    Python 18 Apache-2.0 7 2 0 Updated Oct 10, 2024
  • ArborView Public

    A way to visualize beautiful phylogenetic trees alongside contextual data.

    phac-nml/ArborView’s past year of commit activity
    HTML 0 0 1 2 Updated Oct 10, 2024
  • viralassembly Public

    Assemble and QC viral reads with a reference scheme

    phac-nml/viralassembly’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Oct 9, 2024
  • mob-suite Public

    MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies

    phac-nml/mob-suite’s past year of commit activity
    Python 119 Apache-2.0 31 12 (1 issue needs help) 1 Updated Oct 9, 2024
  • puppet-irida Public

    The IRIDA module lets you use Puppet to install, deploy, and configure IRIDA web server (Alpha status)

    phac-nml/puppet-irida’s past year of commit activity
    Puppet 0 Apache-2.0 0 6 0 Updated Oct 7, 2024
  • mikrokondo Public

    A simple pipeline for bacterial assembly and quality control

    phac-nml/mikrokondo’s past year of commit activity
    Nextflow 12 MIT 2 10 0 Updated Oct 4, 2024
  • ecoli_serotyping Public

    In silico prediction of E. coli serotype

    phac-nml/ecoli_serotyping’s past year of commit activity
    Python 49 Apache-2.0 11 6 1 Updated Oct 3, 2024
  • phac-nml/schedule-pipelines’s past year of commit activity
    Python 0 0 0 0 Updated Oct 3, 2024