Merge pull request #77 from pharmaverse/update_roxygen

Update DESCRIPTION

.github/workflows/common.yml

@@ -60,13 +60,6 @@ jobs:
     needs: get_r_version
     with:
       r-version: "${{ needs.get_r_version.outputs.r-version }}"
-  readme:
-    name: Render README
-    uses: pharmaverse/admiralci/.github/workflows/readme-render.yml@main
-    if: github.event_name == 'push'
-    needs: get_r_version
-    with:
-      r-version: "${{ needs.get_r_version.outputs.r-version }}"
   validation:
     name: Validation
     uses: pharmaverse/admiralci/.github/workflows/r-pkg-validation.yml@main
@@ -128,9 +121,9 @@ jobs:
     needs: get_r_version
     with:
       r-version: "${{ needs.get_r_version.outputs.r-version }}"
-  vbump:
-    name: Version Bump 🤜🤛
-    if: github.event_name == 'push'
-    uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main
-    secrets:
-      REPO_GITHUB_TOKEN: ${{ secrets.PHARMAVERSE_BOT }}
+  # vbump:
+  #   name: Version Bump 🤜🤛
+  #   if: github.event_name == 'push'
+  #   uses: insightsengineering/r.pkg.template/.github/workflows/version-bump.yaml@main
+  #   secrets:
+  #     REPO_GITHUB_TOKEN: ${{ secrets.PHARMAVERSE_BOT }}

DESCRIPTION

@@ -1,7 +1,7 @@
 Type: Package
 Package: admiraltemplate
 Title: ADaM in R Asset Library - Extension
-Version: 0.0.3.9001
+Version: 0.0.3
 Authors@R: 
     person("Open", "Source", , "[email protected]", role = c("aut", "cre"))
 Description: A toolbox for programming Clinical Data Standards Interchange
@@ -54,4 +54,4 @@ Encoding: UTF-8
 Language: en-US
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.3
+RoxygenNote: 7.3.1

NEWS.md

@@ -1,10 +1,19 @@
-# admiraltemplate 0.0.3.9001
+# admiraltemplate 0.0.3
 
 - Removed renv and related files (#70)
 
 ## Updates to site
 
- - Package Extension guidance on the front page was updated and moved to [this location](https://pharmaverse.github.io/admiraldev/main/articles/package_extensions.html) in `{admiraldev}`, and a link was added to point to the new location (#61).
+ - Package Extension guidance on the front page was updated and moved to [this location](https://pharmaverse.github.io/admiraldev/articles/package_extensions.html) in `{admiraldev}`, and a link was added to point to the new location (#61).
+
+## CI workflows
+
+- [`admiralci` workflows](https://github.com/pharmaverse/admiralci) has been updated. Indeed, workflows are not anymore based on `renv` framework to manage dependencies (`devtools` is used instead). Moreover, we now use latest version of `R` for all workflows, and run `R CMD CHECKS` for following R release version (R latest stable version), R devel version (in development version), and R previous release. More details are available in [admiralci doc](https://pharmaverse.github.io/admiralci/index.html).
+As a result, `.github/workflows/common.yml` file has been updated, and all `renv` configurations has been removed.
+
+## admiral.test removed
+
+- `admiral.test` package has been replaced by [`pharmaversesdtm`](https://github.com/pharmaverse/pharmaversesdtm)
 
 # admiraltemplate 0.0.2
 

README.md

@@ -30,9 +30,7 @@ to adhere to the following standards:
     Conduct](https://pharmaverse.github.io/admiral/CODE_OF_CONDUCT.html)
 -   [Manifesto](https://pharmaverse.github.io/admiral/index.html?q=manifest#admiral-manifesto)
 -   [Programming
-    Strategy](https://pharmaverse.github.io/admiraldev/main/articles/programming_strategy.html)
--   [Development
-    Process](https://pharmaverse.github.io/admiraldev/main/articles/development_process.html)
+    Strategy](https://pharmaverse.github.io/admiraldev/articles/programming_strategy.html)
 -   Follow consistent workflow checks
 -   A CRAN Release means 90% or greater test coverage
 
@@ -64,6 +62,6 @@ The repository template includes the following:
 For detailed information regarding the ethos of `{admiral}` package
 extensions and how to decide if you should set your own one up, please
 see our [Package Extension
-Guidance](https://pharmaverse.github.io/admiraldev/main/articles/package_extensions.html).
+Guidance](https://pharmaverse.github.io/admiraldev/articles/package_extensions.html).
 You will also find details about team setup, suggested workflow and
 lessons learned from past package extensions.

inst/WORDLIST

@@ -1,5 +1,6 @@
 ADXX
 ADaM
+admiralci
 Arancibia
 Biologics
 CDISC

inst/templates/ad_adxx.R

@@ -4,6 +4,6 @@
 #
 # Input: xx, xx, xx
 library(admiral)
-library(admiral.test) # Contains example datasets from the CDISC pilot project
+library(pharmaversesdtm) # Contains example datasets from the CDISC pilot project
 
 # Add your template ADaM script code