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Closes #104: address cran feedback 404 links #105

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2 changes: 1 addition & 1 deletion DESCRIPTION
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Expand Up @@ -18,7 +18,7 @@ Description: A set of Study Data Tabulation Model (SDTM) datasets from the Clini
(2021) <https://www.cdisc.org/system/files/members/standard/foundational/SDTMIG%20v3.4-FINAL_2022-07-21.pdf>.
Language: en-US
License: Apache License (>= 2.0)
URL: https://pharmaverse.github.io/pharmaversesdtm/main/, https://github.com/pharmaverse/pharmaversesdtm
URL: https://pharmaverse.github.io/pharmaversesdtm, https://github.com/pharmaverse/pharmaversesdtm
Depends: R (>= 3.5.0)
Encoding: UTF-8
LazyData: true
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28 changes: 14 additions & 14 deletions R/data.R
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Expand Up @@ -9,7 +9,7 @@
#'
#' An example Adverse Events SDTM dataset with ophthalmology-specific variable `AELAT`
#'
#' @source Constructed using `ae` from the `{pharmaversesdtm}` package # nolint
#' @source Constructed using `ae` from the `{pharmaversesdtm}` package
"ae_ophtha"

#' Concomitant Medication
Expand Down Expand Up @@ -51,7 +51,7 @@
#'
#' An example Exposure SDTM dataset with ophthalmology-specific variables such as `EXLOC` and `EXLAT`
#'
#' @source Constructed using `ex` from the `{pharmaversesdtm}` package #nolint
#' @source Constructed using `ex` from the `{pharmaversesdtm}` package
"ex_ophtha"

#' Laboratory Measurements
Expand Down Expand Up @@ -97,7 +97,7 @@
#'
#' An example Questionnaires SDTM dataset with ophthalmology-specific questionnaire of NEI VFQ-25
#'
#' @source Constructed using `qs` from the `{pharmaversesdtm}` package #nolint
#' @source Constructed using `qs` from the `{pharmaversesdtm}` package
"qs_ophtha"

#' Subject Characteristic for Ophthalmology
Expand Down Expand Up @@ -244,75 +244,75 @@
#'
#' An example SDTM DM dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_dm.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"dm_vaccine"

#' Vital Signs for Vaccine
#'
#' An example SDTM VS dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_vs.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"vs_vaccine"

#' Clinical Events for Vaccine
#'
#' An example SDTM CE dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_ce.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"ce_vaccine"

#' Exposures for Vaccine
#'
#' An example SDTM EX dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_ex.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"ex_vaccine"

#' Immunogenicity Specimen Assessments for Vaccine
#'
#' An example SDTM IS for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_is.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"is_vaccine"

#' Findings About Clinical Events for Vaccine
#'
#' An example SDTM FACE for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_face.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"face_vaccine"

#' Supplemental Qualifiers for Clinical Events for Vaccine
#'
#' An example SDTM SUPPCE for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_suppce.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"suppce_vaccine"

#' Supplemental Qualifiers for Demographics for Vaccine
#'
#' An example SDTM SUPPDM dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_suppdm.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"suppdm_vaccine"

#' Supplemental Qualifiers for Exposures for Vaccine
#'
#' An example SDTM SUPPEX dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_suppex.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"suppex_vaccine"

#' Supplemental Qualifiers for Findings About for Clinical Events for Vaccine
#'
#' An example SDTM SUPPFACE dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_suppface.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"suppface_vaccine"

#' Supplemental Qualifiers for Immunogenicity Specimen Assessments for Vaccine
#'
#' An example SDTM SUPPIS dataset for vaccine studies
#'
#' @source \url{https://github.com/pharmaverse/admiralvaccine/blob/main/data/vx_suppis.rda} # nolint
#' @source Constructed by `{admiralvaccine}` developers
"suppis_vaccine"
2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -26,7 +26,7 @@ remotes::install_github("pharmaverse/pharmaversesdtm", ref = "main")

# Data Sources

Some of the test datasets has been sourced from the [CDISC pilot project](https://github.com/cdisc-org/sdtm-adam-pilot-project), while other datasets have been constructed ad-hoc by the admiral team. Please check the [Reference page](https://pharmaverse.github.io/pharmaversesdtm/cran-release/reference/index.html) for detailed information regarding the source of specific datasets.
Some of the test datasets has been sourced from the [CDISC pilot project](https://github.com/cdisc-org/sdtm-adam-pilot-project), while other datasets have been constructed ad-hoc by the admiral team. Please check the [Reference page](https://pharmaverse.github.io/pharmaversesdtm/reference/index.html) for detailed information regarding the source of specific datasets.

# Naming Conventions {#naming}

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5 changes: 5 additions & 0 deletions cran-comments.md
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@@ -0,0 +1,5 @@
## R CMD check results

0 errors | 0 warnings | 1 note

* This is a new release.
2 changes: 1 addition & 1 deletion man/ae_ophtha.Rd

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2 changes: 1 addition & 1 deletion man/ce_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/dm_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/ex_ophtha.Rd

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2 changes: 1 addition & 1 deletion man/ex_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/face_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/is_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/pharmaversesdtm-package.Rd

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2 changes: 1 addition & 1 deletion man/qs_ophtha.Rd

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2 changes: 1 addition & 1 deletion man/suppce_vaccine.Rd

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

2 changes: 1 addition & 1 deletion man/suppdm_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/suppex_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/suppface_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/suppis_vaccine.Rd

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2 changes: 1 addition & 1 deletion man/vs_vaccine.Rd

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