pkp/pkp-lib#9771 Move ORCID functionality into core application

.gitmodules

@@ -23,9 +23,6 @@
 [submodule "plugins/generic/googleAnalytics"]
 	path = plugins/generic/googleAnalytics
 	url = https://github.com/pkp/googleAnalytics.git
-[submodule "plugins/generic/orcidProfile"]
-	path = plugins/generic/orcidProfile
-	url = https://github.com/pkp/orcidProfile.git
 [submodule "plugins/blocks/makeSubmission"]
 	path = plugins/blocks/makeSubmission
 	url = https://github.com/pkp/makeSubmission.git

api/v1/orcid/index.php

@@ -0,0 +1,20 @@
+<?php
+
+/**
+ * @defgroup api_v1_orcid ORCID API requests
+ */
+
+/**
+ * @file api/v1/orcid/index.php
+ *
+ * Copyright (c) 2024 Simon Fraser University
+ * Copyright (c) 2024 John Willinsky
+ * Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
+ *
+ * @ingroup api_v1_orcid
+ *
+ * @brief Handle requests for ORCID API functions.
+ *
+ */
+
+return new \PKP\handler\APIHandler(new \PKP\API\v1\orcid\OrcidController());

classes/orcid/OrcidReview.php

@@ -0,0 +1,134 @@
+<?php
+
+/**
+ * @file classes/orcid/OrcidReview.php
+ *
+ * Copyright (c) 2014-2024 Simon Fraser University
+ * Copyright (c) 2000-2024 John Willinsky
+ * Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
+ *
+ * @class OrcidReview
+ *
+ * @brief Builds ORCID review object for deposit
+ */
+
+namespace APP\orcid;
+
+use APP\core\Application;
+use APP\submission\Submission;
+use Carbon\Carbon;
+use PKP\context\Context;
+use PKP\doi\Doi;
+use PKP\i18n\LocaleConversion;
+use PKP\orcid\OrcidManager;
+use PKP\submission\reviewAssignment\ReviewAssignment;
+
+class OrcidReview
+{
+    private array $data;
+
+    public function __construct(
+        private Submission $submission,
+        private ReviewAssignment $review,
+        private Context $context,
+    ) {
+        $this->data = $this->build();
+    }
+
+    /**
+     * Returns ORCID review data as an associative array, ready for deposit.
+     */
+    public function toArray(): array
+    {
+        return $this->data;
+    }
+
+    /**
+     * Builds the internal structure for the ORCID review.
+     */
+    private function build(): array
+    {
+        $publicationUrl = Application::get()->getDispatcher()->url(
+            Application::get()->getRequest(),
+            Application::ROUTE_PAGE,
+            $this->context->getPath(),
+            'article',
+            'view',
+            $this->submission->getId(),
+            urlLocaleForPage: '',
+        );
+
+        $submissionLocale = $this->submission->getData('locale');
+        $currentPublication = $this->submission->getCurrentPublication();
+
+        if (empty($this->review->getData('dateCompleted')) || empty($this->context->getData('onlineIssn'))) {
+            return [];
+        }
+
+        $reviewCompletionDate = Carbon::parse($this->review->getData('dateCompleted'));
+
+        $orcidReview = [
+            'reviewer-role' => 'reviewer',
+            'review-type' => 'review',
+            'review-completion-date' => [
+                'year' => [
+                    'value' => $reviewCompletionDate->format('Y')
+                ],
+                'month' => [
+                    'value' => $reviewCompletionDate->format('m')
+                ],
+                'day' => [
+                    'value' => $reviewCompletionDate->format('d')
+                ]
+            ],
+            'review-group-id' => 'issn:' . $this->context->getData('onlineIssn'),
+
+            'convening-organization' => [
+                'name' => $this->context->getData('publisherInstitution'),
+                'address' => [
+                    'city' => OrcidManager::getCity($this->context),
+                    'country' => OrcidManager::getCountry($this->context),
+
+                ]
+            ],
+            'review-identifiers' => ['external-id' => [
+                [
+                    'external-id-type' => 'source-work-id',
+                    'external-id-value' => $this->review->getData('reviewRoundId'),
+                    'external-id-relationship' => 'part-of']
+            ]]
+        ];
+        if ($this->review->getReviewMethod() == ReviewAssignment::SUBMISSION_REVIEW_METHOD_OPEN) {
+            $orcidReview['subject-url'] = ['value' => $publicationUrl];
+            $orcidReview['review-url'] = ['value' => $publicationUrl];
+            $orcidReview['subject-type'] = 'journal-article';
+            $orcidReview['subject-name'] = [
+                'title' => ['value' => $this->submission->getCurrentPublication()->getLocalizedData('title') ?? '']
+            ];
+
+            if (!empty($currentPublication->getDoi())) {
+                /** @var Doi $doiObject */
+                $doiObject = $currentPublication->getData('doiObject');
+                $externalIds = [
+                    'external-id-type' => 'doi',
+                    'external-id-value' => $doiObject->getDoi(),
+                    'external-id-url' => [
+                        'value' => $doiObject->getResolvingUrl(),
+                    ],
+                    'external-id-relationship' => 'self'
+
+                ];
+                $orcidReview['subject-external-identifier'] = $externalIds;
+            }
+        }
+
+        $allTitles = $currentPublication->getData('title');
+        foreach ($allTitles as $locale => $title) {
+            if ($locale !== $submissionLocale) {
+                $orcidReview['subject-name']['translated-title'] = ['value' => $title, 'language-code' => LocaleConversion::getIso1FromLocale($locale)];
+            }
+        }
+
+        return $orcidReview;
+    }
+}

classes/orcid/OrcidWork.php

@@ -0,0 +1,116 @@
+<?php
+
+/**
+ * @file classes/orcid/OrcidWork.php
+ *
+ * Copyright (c) 2014-2024 Simon Fraser University
+ * Copyright (c) 2000-2024 John Willinsky
+ * Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
+ *
+ * @class OrcidWork
+ *
+ * @brief Builds ORCID work object for deposit
+ */
+
+namespace APP\orcid;
+
+use APP\core\Application;
+use APP\issue\Issue;
+use APP\plugins\generic\citationStyleLanguage\CitationStyleLanguagePlugin;
+use APP\plugins\PubIdPlugin;
+use APP\publication\Publication;
+use APP\submission\Submission;
+use PKP\context\Context;
+use PKP\orcid\PKPOrcidWork;
+use PKP\plugins\PluginRegistry;
+
+class OrcidWork extends PKPOrcidWork
+{
+    public function __construct(
+        protected Publication $publication,
+        protected Context $context,
+        protected array $authors,
+        protected ?Issue $issue = null
+    ) {
+        parent::__construct($this->publication, $this->context, $this->authors);
+    }
+
+    /**
+     * @inheritdoc
+     */
+    protected function getAppPubIdExternalIds(PubIdPlugin $plugin): array
+    {
+        $ids = [];
+
+        $pubIdType = $plugin->getPubIdType();
+        $pubId = $this->issue?->getStoredPubId($pubIdType);
+        if ($pubId) {
+            $ids[] = [
+                'external-id-type' => self::PUBID_TO_ORCID_EXT_ID[$pubIdType],
+                'external-id-value' => $pubId,
+                'external-id-url' => [
+                    'value' => $plugin->getResolvingURL($this->context->getId(), $pubId)
+                ],
+                'external-id-relationship' => 'part-of'
+            ];
+        }
+
+        return $ids;
+    }
+
+    /**
+     * @inheritdoc
+     */
+    protected function getAppDoiExternalIds(): array
+    {
+        $ids = [];
+
+        $issueDoiObject = $this->issue->getData('doiObject');
+        if ($issueDoiObject) {
+            $ids[] = [
+                'external-id-type' => self::PUBID_TO_ORCID_EXT_ID['doi'],
+                'external-id-value' => $issueDoiObject->getData('doi'),
+                'external-id-url' => [
+                    'value' => $issueDoiObject->getResolvingUrl()
+                ],
+                'external-id-relationship' => 'part-of'
+            ];
+        }
+
+        return $ids;
+    }
+
+    /**
+     * @inheritDoc
+     */
+    protected function getOrcidPublicationType(): string
+    {
+        return 'journal-article';
+    }
+
+    /**
+     * @inheritdoc
+     */
+    protected function getBibtexCitation(Submission $submission): string
+    {
+        $request = Application::get()->getRequest();
+        try {
+            PluginRegistry::loadCategory('generic');
+            /** @var CitationStyleLanguagePlugin $citationPlugin */
+            $citationPlugin = PluginRegistry::getPlugin('generic', 'citationstylelanguageplugin');
+            return trim(
+                strip_tags(
+                    $citationPlugin->getCitation(
+                        $request,
+                        $submission,
+                        'bibtex',
+                        $this->issue,
+                        $this->publication
+                    )
+                )
+            );
+        } catch (\Exception $exception) {
+            return '';
+        }
+    }
+}

classes/orcid/actions/SendReviewToOrcid.php

@@ -0,0 +1,27 @@
+<?php
+
+/**
+ * @file classes/orcid/actions/SendReviewToOrcid.php
+ *
+ * Copyright (c) 2014-2024 Simon Fraser University
+ * Copyright (c) 2000-2024 John Willinsky
+ * Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
+ *
+ * @class SendReviewToOrcid
+ *
+ * @brief Trigger review deposit to ORCID if supported by the application (currently only OJS).
+ */
+
+namespace APP\orcid\actions;
+
+use APP\jobs\orcid\DepositOrcidReview;
+use PKP\orcid\actions\PKPSendReviewToOrcid;
+
+class SendReviewToOrcid extends PKPSendReviewToOrcid
+{
+    /** @inheritDoc */
+    public function execute(): void
+    {
+        dispatch(new DepositOrcidReview($this->submission, $this->context, $this->reviewAssignment));
+    }
+}

classes/orcid/actions/SendSubmissionToOrcid.php

@@ -0,0 +1,44 @@
+<?php
+
+/**
+ * @file classes/orcid/actions/SendSubmissionToOrcid.php
+ *
+ * Copyright (c) 2014-2024 Simon Fraser University
+ * Copyright (c) 2000-2024 John Willinsky
+ * Distributed under the GNU GPL v3. For full terms see the file docs/COPYING.
+ *
+ * @class SendSubmissionToOrcid
+ *
+ * @brief Compile and trigger deposits of submissions to ORCID.
+ */
+
+namespace APP\orcid\actions;
+
+use APP\facades\Repo;
+use APP\orcid\OrcidWork;
+use PKP\orcid\actions\PKPSendSubmissionToOrcid;
+use PKP\orcid\PKPOrcidWork;
+
+class SendSubmissionToOrcid extends PKPSendSubmissionToOrcid
+{
+    /**
+     * @inheritDoc
+     */
+    protected function getOrcidWork(array $authors): ?PKPOrcidWork
+    {
+        $issueId = $this->publication->getData('issueId');
+        if (isset($issueId)) {
+            $issue = Repo::issue()->get($issueId);
+        }
+
+        return new OrcidWork($this->publication, $this->context, $authors, $issue ?? null);
+    }
+
+    /**
+     * @inheritDoc
+     */
+    protected function canDepositSubmission(): bool
+    {
+        return true;
+    }
+}

dbscripts/xml/upgrade.xml

@@ -140,6 +140,7 @@
 		<migration class="PKP\migration\upgrade\v3_5_0\I8826_AddMissingForeignKeys" />
 		<migration class="APP\migration\upgrade\v3_5_0\I9937_EditorialTeamToEditorialHistory"/>
 		<migration class="PKP\migration\upgrade\v3_5_0\I10041_UserGroupsAndUserUserGroupsMastheadValues"/>
+        <migration class="PKP\migration\upgrade\v3_5_0\I9771_OrcidMigration"/>
 	</upgrade>
 
 	<!-- update plugin configuration - should be done as the final upgrade task -->