Generated documentation for workshops/CSHL-vision-course-2024/branch/…

…main jenkins-plenoptic-cshl-vision-2024-main-13
plenoptic-org · Nov 13, 2024 · 0b20a86 · 0b20a86
1 parent 3336b2e
commit 0b20a86
Show file tree

Hide file tree

Showing 39 changed files with 10,422 additions and 8,338 deletions.
diff --git a/...on-course-2024/branch/main/_downloads/6ffa5feaee419204975763026b9ef211/introduction.ipynb b/...on-course-2024/branch/main/_downloads/6ffa5feaee419204975763026b9ef211/introduction.ipynb
diff --git a/...-2024/branch/main/_downloads/dbf6e61da9e91ccf52bab94fae2ee5d8/introduction-stripped.ipynb b/...-2024/branch/main/_downloads/dbf6e61da9e91ccf52bab94fae2ee5d8/introduction-stripped.ipynb
diff --git a/...in/_images/03550dcbe8e9bce559ca56975d992d3bfea62792b4f95ed975500089c1b37d4f.png b/...in/_images/03550dcbe8e9bce559ca56975d992d3bfea62792b4f95ed975500089c1b37d4f.png
diff --git a/...in/_images/13595eefb0b02e7912c6ace5ce2d4ea2121771c82bf6675f1669962a9b604466.png b/...in/_images/13595eefb0b02e7912c6ace5ce2d4ea2121771c82bf6675f1669962a9b604466.png
diff --git a/...in/_images/206b75a1b5569eae196c58a745f7c6db61b634e4860940310ed6a81b35d66ecf.png b/...in/_images/206b75a1b5569eae196c58a745f7c6db61b634e4860940310ed6a81b35d66ecf.png
diff --git a/...in/_images/238bb1c18dee5894c83d0ccaa4c9d2c2834a8c0f5590dce52ec40f1685158e0a.png b/...in/_images/238bb1c18dee5894c83d0ccaa4c9d2c2834a8c0f5590dce52ec40f1685158e0a.png
diff --git a/...in/_images/35e2686dba00bfc979f4a42d9d3d4a0cb77025ec02c02405b850912c032db042.png b/...in/_images/35e2686dba00bfc979f4a42d9d3d4a0cb77025ec02c02405b850912c032db042.png
diff --git a/...in/_images/3ab10e2453597c5ab590957b5aef570ee930326f95ab60d53d655fddc4f34ec4.png b/...in/_images/3ab10e2453597c5ab590957b5aef570ee930326f95ab60d53d655fddc4f34ec4.png
diff --git a/...in/_images/46e0310d4b481df5d1c096793b254ed6d17d9d3efbe85ab56dcb24dd2812d005.png b/...in/_images/46e0310d4b481df5d1c096793b254ed6d17d9d3efbe85ab56dcb24dd2812d005.png
diff --git a/...in/_images/514fa5ab7d95d7b864e7d289a18c44eb4f0b89ba000da0c17bebd95bdfa567ce.png b/...in/_images/514fa5ab7d95d7b864e7d289a18c44eb4f0b89ba000da0c17bebd95bdfa567ce.png
diff --git a/...in/_images/5dafbea0a6e79486cb7335fa58a51160c1773c43555c499040ef2187fe6025e9.png b/...in/_images/5dafbea0a6e79486cb7335fa58a51160c1773c43555c499040ef2187fe6025e9.png
diff --git a/...in/_images/683b722fd07490e3431eb8436a415958f43f77f732a9d7d44e49524563604872.png b/...in/_images/683b722fd07490e3431eb8436a415958f43f77f732a9d7d44e49524563604872.png
diff --git a/...in/_images/68ea0bdd2a28a149f7e5026bc9cfe1314d4a37a2d9414dba5951967f1b60db99.png b/...in/_images/68ea0bdd2a28a149f7e5026bc9cfe1314d4a37a2d9414dba5951967f1b60db99.png
diff --git a/...in/_images/8e597ad57a75bd50c746e24345f52e204b1dd5e7709a73ec25b89526e0e71170.png b/...in/_images/8e597ad57a75bd50c746e24345f52e204b1dd5e7709a73ec25b89526e0e71170.png
diff --git a/...in/_images/9bfa3bfe4c636d0548e95dcaa8ccef9d7cde699f584f9906b21f3bdd33040c80.png b/...in/_images/9bfa3bfe4c636d0548e95dcaa8ccef9d7cde699f584f9906b21f3bdd33040c80.png
diff --git a/...in/_images/a025d17d25cbc2359f6e1eb588fa55c7455ccf048fcac800d0460394cc279deb.png b/...in/_images/a025d17d25cbc2359f6e1eb588fa55c7455ccf048fcac800d0460394cc279deb.png
diff --git a/...in/_images/b100e0d51c11ba31b9c732dbf3ef73c781474ecad435ebfba7994406824b507c.png b/...in/_images/b100e0d51c11ba31b9c732dbf3ef73c781474ecad435ebfba7994406824b507c.png
diff --git a/...in/_images/b38bd0c3dff7b98574007f174686ad9ce62a6d2892b2925cf34587c69929efe5.png b/...in/_images/b38bd0c3dff7b98574007f174686ad9ce62a6d2892b2925cf34587c69929efe5.png
diff --git a/...in/_images/c262a3f9838e632a0e3bb7f8939e15e309d2e09d056a0ca64b3a3dec2ba22638.png b/...in/_images/c262a3f9838e632a0e3bb7f8939e15e309d2e09d056a0ca64b3a3dec2ba22638.png
diff --git a/...in/_images/c83f6b419408ee6630614e6b3765445a5d0162028cb7b68cdb622747c418e777.png b/...in/_images/c83f6b419408ee6630614e6b3765445a5d0162028cb7b68cdb622747c418e777.png
diff --git a/...in/_images/ce400535362e84004e3a0e6b8ca721c202a58c026baf13337b58ba349cec7f87.png b/...in/_images/ce400535362e84004e3a0e6b8ca721c202a58c026baf13337b58ba349cec7f87.png
diff --git a/...in/_images/d7a62a5ec407745ce83524de2098086fbcd6d0b18fff290f0737b2509fe3c22e.png b/...in/_images/d7a62a5ec407745ce83524de2098086fbcd6d0b18fff290f0737b2509fe3c22e.png
diff --git a/...in/_images/de1f22e5f3e02670c86048a01af6a6731bd200b33ae4460cbed2fc5259e74eeb.png b/...in/_images/de1f22e5f3e02670c86048a01af6a6731bd200b33ae4460cbed2fc5259e74eeb.png
diff --git a/...in/_images/e0bd3bac6aface92801369d8cf556f5cb8d233085df81cbfa058e4ba5cf6d5d8.png b/...in/_images/e0bd3bac6aface92801369d8cf556f5cb8d233085df81cbfa058e4ba5cf6d5d8.png
diff --git a/...in/_images/e4d6991cb65b3a07f90ad6a44c116d81411993155a6d8f069412d06c35959056.png b/...in/_images/e4d6991cb65b3a07f90ad6a44c116d81411993155a6d8f069412d06c35959056.png
diff --git a/...in/_images/f4d07c5c36801f711d1ae245988344fb0142c6a438da3545ab544c0d80802395.png b/...in/_images/f4d07c5c36801f711d1ae245988344fb0142c6a438da3545ab544c0d80802395.png
diff --git a/...in/_images/fa2ed4f1f0110218b6cc173f47bef7aa942c34bc3644b27d22d684e522add6a6.png b/...in/_images/fa2ed4f1f0110218b6cc173f47bef7aa942c34bc3644b27d22d684e522add6a6.png
diff --git a/...in/_images/fc4cfe29ec17e5c52ab4a9b2cfe60bd91b69e0c1e9e974078dfd7aabcf9d42d2.png b/...in/_images/fc4cfe29ec17e5c52ab4a9b2cfe60bd91b69e0c1e9e974078dfd7aabcf9d42d2.png
diff --git a/...in/_images/fcd517fff1761df8089ab4af07aa11e49159c48de0bb80ec9196c8f8de75c2d3.png b/...in/_images/fcd517fff1761df8089ab4af07aa11e49159c48de0bb80ec9196c8f8de75c2d3.png
diff --git a/...in/_images/ff795dbf76bb14d0d6ab1b70213fb8508972ce0bd8f1811d0ce131afe5c2703c.png b/...in/_images/ff795dbf76bb14d0d6ab1b70213fb8508972ce0bd8f1811d0ce131afe5c2703c.png
diff --git a/workshops/CSHL-vision-course-2024/branch/main/_sources/introduction-stripped.md b/workshops/CSHL-vision-course-2024/branch/main/_sources/introduction-stripped.md
diff --git a/workshops/CSHL-vision-course-2024/branch/main/genindex.html b/workshops/CSHL-vision-course-2024/branch/main/genindex.html
@@ -204,6 +204,7 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="glossary.html">Glossary</a></li>
 <li class="toctree-l1"><a class="reference internal" href="introduction.html">Introduction</a></li>
+<li class="toctree-l1"><a class="reference internal" href="introduction-stripped.html">Introduction, Text Removed</a></li>
 </ul>
 
     </div>

diff --git a/workshops/CSHL-vision-course-2024/branch/main/glossary.html b/workshops/CSHL-vision-course-2024/branch/main/glossary.html
@@ -205,6 +205,7 @@
         <ul class="current nav bd-sidenav">
 <li class="toctree-l1 current active"><a class="current reference internal" href="#">Glossary</a></li>
 <li class="toctree-l1"><a class="reference internal" href="introduction.html">Introduction</a></li>
+<li class="toctree-l1"><a class="reference internal" href="introduction-stripped.html">Introduction, Text Removed</a></li>
 </ul>
 
     </div>

diff --git a/workshops/CSHL-vision-course-2024/branch/main/index.html b/workshops/CSHL-vision-course-2024/branch/main/index.html
@@ -206,6 +206,7 @@
         <ul class="nav bd-sidenav">
 <li class="toctree-l1"><a class="reference internal" href="glossary.html">Glossary</a></li>
 <li class="toctree-l1"><a class="reference internal" href="introduction.html">Introduction</a></li>
+<li class="toctree-l1"><a class="reference internal" href="introduction-stripped.html">Introduction, Text Removed</a></li>
 </ul>
 
     </div>
@@ -379,7 +380,7 @@ <h2> Contents </h2>
 <h1>Welcome to plenoptic tutorial, CSHL Vision Course 2024<a class="headerlink" href="#welcome-to-plenoptic-tutorial-cshl-vision-course-2024" title="Link to this heading">#</a></h1>
 <p>This site hosts the example notebook used for the plenoptic tutorial given at the Cold Spring Harbor Labs Computational Neuroscience: Vision course in July 2024. This one-hour(ish) tutorial aims to introduce the basics of using plenoptic in order to better understand computational visual models with simple examples. We hope to explain not just <code class="docutils literal notranslate"><span class="pre">plenoptic</span></code>’s syntax but also the type of reasoning that it facilitates.</p>
 <p>The presentation I gave at the beginning of this session can be found <a class="reference external" href="https://labforcomputationalvision.github.io/plenoptic_presentations/2024-07-12_CSHL/slides.html">here</a>.</p>
-<p>This website contains two versions of the notebook we’ll use today: <a class="reference internal" href="introduction.html"><span class="std std-doc">with</span></a> and <a class="reference internal" href="#introduction-stripped.md"><span class="xref myst">without</span></a> explanatory text. Today you’ll run the version without explanatory text, which contains cells of code, while listening to my description. If later you wish to revisit this material, the version with explanatory text should help you.</p>
+<p>This website contains two versions of the notebook we’ll use today: <a class="reference internal" href="introduction.html"><span class="std std-doc">with</span></a> and <a class="reference internal" href="introduction-stripped.html"><span class="std std-doc">without</span></a> explanatory text. Today you’ll run the version without explanatory text, which contains cells of code, while listening to my description. If later you wish to revisit this material, the version with explanatory text should help you.</p>
 <p>You may also find the <a class="reference internal" href="glossary.html"><span class="std std-doc">glossary</span></a> useful as you go through the notebook.</p>
 <p>You can also <a class="reference internal" href="#setup"><span class="xref myst">follow the setup instructions here</span></a> to download these notebooks and run them locally, but to avoid potential installation issues in this brief period of time, we’ll use binder instead. Click on the <code class="docutils literal notranslate"><span class="pre">launch</span> <span class="pre">binder</span></code> badge on the upper left sidebar, which will then prompt you to login. Use the google account that you gave to the class organizers; if you get a 403 forbidden error or would like to use a different account, let me know so that I can give it permission. The binder instance provides a GPU with the environment necessary to run the notebook. See <a class="reference internal" href="#binder"><span class="xref myst">the section below</span></a> for more details on the binder, including some important usage notes.</p>
 <section id="setup">
@@ -423,7 +424,7 @@ <h2>Setup<a class="headerlink" href="#setup" title="Link to this heading">#</a><
 </div>
 <div class="admonition important">
 <p class="admonition-title">Important</p>
-<p>It’s possible this step will fail (especially if you are on Windows). If so, go to the <a class="reference internal" href="#introduction-stripped.md"><span class="xref myst">notebook on this site</span></a> and download it manually.</p>
+<p>It’s possible this step will fail (especially if you are on Windows). If so, go to the <a class="reference internal" href="introduction-stripped.html"><span class="std std-doc">notebook on this site</span></a> and download it manually.</p>
 </div>
 </li>
 <li><p>Open up jupyter, then double-click on the <code class="docutils literal notranslate"><span class="pre">introduction-stripped.ipynb</span></code> notebook:</p>
@@ -460,6 +461,15 @@ <h2>Contents<a class="headerlink" href="#contents" title="Link to this heading">
 <li class="toctree-l2"><a class="reference internal" href="introduction.html#conclusion">Conclusion</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="introduction-stripped.html">Introduction, Text Removed</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="introduction-stripped.html#plenoptic-basics">Plenoptic basics</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introduction-stripped.html#examining-model-invariances-with-metamers">Examining model invariances with metamers</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introduction-stripped.html#examining-model-sensitivies-to-eigendistortions">Examining model sensitivies to eigendistortions</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introduction-stripped.html#a-more-complex-model">A more complex model</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introduction-stripped.html#adding-some-nonlinear-features-to-the-mix">Adding some nonlinear features to the mix</a></li>
+<li class="toctree-l2"><a class="reference internal" href="introduction-stripped.html#conclusion">Conclusion</a></li>
+</ul>
+</li>
 </ul>
 </div>
 </section>