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Update thinning description and step size #22

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merged 2 commits into from
Apr 22, 2024
Merged

Update thinning description and step size #22

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3cd9b08
Change step size from 100 to 5.
nehill197 Apr 9, 2024
4fc943c
Update help file with more thinning information, and updated expected…
nehill197 Apr 9, 2024
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2 changes: 1 addition & 1 deletion R/mod-model.R
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Original file line number Diff line number Diff line change
Expand Up @@ -61,7 +61,7 @@ mod_model_server <- function(id, upload) {
value = 1,
min = 1,
max = 10000,
step = 100
step = 5
)
})

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8 changes: 5 additions & 3 deletions inst/helpfiles/model.md
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Expand Up @@ -21,7 +21,7 @@ Steps to run the model:
1. Select the thinning.
2. Select the model mode.
3. Press the run button.
- Model may take over 24 hours to run, be patient.
- Model may take more than 5 hours to run in report mode, be patient.
- The run is complete when the Outbox is populated with a table.
- If there is an issue a pop-up box will appear indicating something is not valid, this must be fixed, and the run button will need to be pressed again to restart the model run.
- The app has crashed and needs to be restarted if any of the following occur:
Expand All @@ -34,12 +34,13 @@ Steps to run the model:

##### Thinning

- Allowed values are an integer between 1 and 10000.
- Allowed values are integers between 1 and 10000.
- The suggested starting values are 1 for quick/debug mode and 10 for report mode.
- Increase thinning if the model does not converge.
- The model did not converge if the converged value in the output table is FALSE.
- As the thinning value increases the run time will also increase.
- Start with a small thinning value and increase as needed.
- Thinning is often increased by various values try 1, 50, 100, 200, 500, 1000, etc.
- Thinning is often increased by various values, try 10, 15, 20, 50, 100, 200, 500, 1000, etc.

##### Model Mode

Expand Down Expand Up @@ -83,6 +84,7 @@ There are three model modes:
- How much the chains should be thinned out before storing them.
- Setting nthin = 1 corresponds to keeping all values.
- A value of nthin = 100 would result in keeping every 100th value and discarding all other values.
- The suggested starting values are 1 for quick/debug mode and 10 for report mode.

**ess**

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