docker: added trinity 2.6.6

pveber · Jun 16, 2018 · 84d237f · 84d237f
1 parent d41234d
commit 84d237f
Showing 1 changed file with 13 additions and 0 deletions.
diff --git a/etc/docker-images/trinity/2.6.6/Dockerfile b/etc/docker-images/trinity/2.6.6/Dockerfile
@@ -0,0 +1,13 @@
+FROM pveber/bistro-base:stretch
+
+RUN apt-get update && \
+    apt-get install -y --allow-unauthenticated libc6 libgcc1 libgomp1 libhts1 libstdc++6 perl jaligner \
+    libcommons-collections4-java libgetopt-java libjung-free-java bowtie bowtie2 \
+    python libwww-perl default-jre-headless samtools jellyfish r-base-core \
+    r-cran-cluster r-bioc-edger r-bioc-qvalue rsem berkeley-express trimmomatic \
+    transdecoder parafly curl
+RUN wget "https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.6.6.tar.gz"
+RUN tar xvfz Trinity-v2.6.6.tar.gz
+RUN cd trinityrnaseq-Trinity-v2.6.6 && make && make plugins
+RUN cd trinityrnaseq-Trinity-v2.6.6 && cp -r Trinity PerlLib Butterfly Chrysalis Inchworm trinity-plugins util /usr/bin
+ENV TRINITY_HOME /trinityrnaseq-Trinity-v2.6.6