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@AndreasHeger AndreasHeger released this 29 Mar 19:12
· 199 commits to master since this release
v0.19.0
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Release 0.19.0

This release wraps htslib/samtools/bcftools version 1.15.

  • [#1085] Improve getopt()/getopt_long() resetting when running samtools/bcftools commands

  • [#1078] Support BAM_CPAD in get_aligned_pairs

  • [#1063] Run flake8 and fix some linting issues

  • [#1088] Add AlignedSegment is_mapped/mate_is_mapped/is_forward/mate_is_forward properties

  • Write an absent AlignedSegment.qual as all-bytes-0xff

  • Fix BGZFile.read() behaviour near or at EOF

  • First API for the htslib modified bases interface

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