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MAINT: update env files with py39 (#585)
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@lizgehret
lizgehret authored Jun 25, 2024
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Expand Up @@ -70,32 +70,32 @@ QIIME 2 Amplicon Distribution
</p>
</div>
<div id="amplicon-macOS-intel" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-osx-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-osx-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py38-osx-conda.yml</pre>
<pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="amplicon-macOS-apple-silicon" class="tab-pane fade">
<p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-osx-conda.yml
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-osx-conda.yml
conda activate qiime2-amplicon-2024.5
conda config --env --set subdir osx-64</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py38-osx-conda.yml</pre>
<pre>rm qiime2-amplicon-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="amplicon-linux" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-linux-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
<pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
</div>
<div id="amplicon-wsl" class="tab-pane fade">
<p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py38-linux-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/amplicon/qiime2-amplicon-2024.5-py39-linux-conda.yml
conda env create -n qiime2-amplicon-2024.5 --file qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-amplicon-2024.5-py38-linux-conda.yml</pre>
<pre>rm qiime2-amplicon-2024.5-py39-linux-conda.yml</pre>
</div>
</div>
</div>
Expand All @@ -120,32 +120,32 @@ QIIME 2 Metagenome Distribution
</p>
</div>
<div id="metagenome-macOS-intel" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-osx-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-osx-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py38-osx-conda.yml</pre>
<pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="metagenome-macOS-apple-silicon" class="tab-pane fade">
<p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-osx-conda.yml
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-osx-conda.yml
conda activate qiime2-metagenome-2024.5
conda config --env --set subdir osx-64</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py38-osx-conda.yml</pre>
<pre>rm qiime2-metagenome-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="metagenome-linux" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-linux-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
<pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
</div>
<div id="metagenome-wsl" class="tab-pane fade">
<p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py38-linux-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/metagenome/qiime2-metagenome-2024.5-py39-linux-conda.yml
conda env create -n qiime2-metagenome-2024.5 --file qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-metagenome-2024.5-py38-linux-conda.yml</pre>
<pre>rm qiime2-metagenome-2024.5-py39-linux-conda.yml</pre>
</div>
</div>
</div>
Expand All @@ -170,32 +170,32 @@ QIIME 2 Tiny Distribution
</p>
</div>
<div id="tiny-macOS-intel" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-osx-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-osx-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py38-osx-conda.yml</pre>
<pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="tiny-macOS-apple-silicon" class="tab-pane fade">
<p>These instructions are for users with <a href="https://support.apple.com/en-us/HT211814">Apple Silicon</a> chips (M1, M2, etc), and configures the installation of QIIME 2 in <a href="https://developer.apple.com/documentation/apple-silicon/about-the-rosetta-translation-environment">Rosetta 2 emulation mode</a>.</p>
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-osx-conda.yml
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-osx-conda.yml
CONDA_SUBDIR=osx-64 conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-osx-conda.yml
conda activate qiime2-tiny-2024.5
conda config --env --set subdir osx-64</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py38-osx-conda.yml</pre>
<pre>rm qiime2-tiny-2024.5-py39-osx-conda.yml</pre>
</div>
<div id="tiny-linux" class="tab-pane fade">
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-linux-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
<pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
</div>
<div id="tiny-wsl" class="tab-pane fade">
<p>These instructions are identical to the Linux instructions and are intended for users of the <a href="https://learn.microsoft.com/en-us/windows/wsl/about">Windows Subsystem for Linux</a>.</p>
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py38-linux-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
<pre>wget https://data.qiime2.org/distro/tiny/qiime2-tiny-2024.5-py39-linux-conda.yml
conda env create -n qiime2-tiny-2024.5 --file qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
<span>OPTIONAL CLEANUP</span>
<pre>rm qiime2-tiny-2024.5-py38-linux-conda.yml</pre>
<pre>rm qiime2-tiny-2024.5-py39-linux-conda.yml</pre>
</div>
</div>
</div>
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