Update dependencies

Signed-off-by: Gigon Bae <[email protected]>

conda/environments/all_cuda-118_arch-x86_64.yaml

@@ -7,18 +7,23 @@ channels:
 - nvidia
 dependencies:
 - GPUtil>=1.4.0
+- boost-cpp
 - c-compiler
+- catch2
+- cli11
 - click
 - cmake>=3.26.4,!=3.30.0
 - cuda-version=11.8
 - cudatoolkit
 - cupy>=12.0.0
 - cxx-compiler
+- fmt
 - gcc_linux-64=11.*
 - imagecodecs>=2021.6.8
 - ipython
 - jbig
 - lazy_loader>=0.1
+- libabseil
 - libcufile-dev=1.4.0.31
 - libcufile=1.4.0.31
 - libnvjpeg-dev=11.6.0.55
@@ -27,14 +32,18 @@ dependencies:
 - matplotlib-base
 - nbsphinx
 - ninja
+- nlohmann_json
 - numpy>=1.23.4,<2.0a0
 - numpydoc>=1.5
 - nvcc_linux-64=11.8
+- nvtx-c >=3.1.0
 - openslide-python>=1.3.0
 - pip
 - pooch>=1.6.0
 - pre-commit
 - psutil>=5.8.0
+- pybind11
+- pybind11_json
 - pydata-sphinx-theme
 - pytest-cov>=2.12.1
 - pytest-lazy-fixture>=0.6.3
@@ -47,6 +56,7 @@ dependencies:
 - scipy>=1.6.0
 - sphinx<6
 - sysroot_linux-64==2.17
+- taskflow
 - tifffile>=2022.7.28
 - xz
 - yasm

conda/environments/all_cuda-125_arch-x86_64.yaml

@@ -7,33 +7,42 @@ channels:
 - nvidia
 dependencies:
 - GPUtil>=1.4.0
+- boost-cpp
 - c-compiler
+- catch2
+- cli11
 - click
 - cmake>=3.26.4,!=3.30.0
 - cuda-cudart-dev
 - cuda-nvcc
 - cuda-version=12.5
 - cupy>=12.0.0
 - cxx-compiler
+- fmt
 - gcc_linux-64=11.*
 - imagecodecs>=2021.6.8
 - ipython
 - jbig
 - lazy_loader>=0.1
+- libabseil
 - libcufile-dev
 - libnvjpeg-dev
 - libnvjpeg-static
 - libwebp-base
 - matplotlib-base
 - nbsphinx
 - ninja
+- nlohmann_json
 - numpy>=1.23.4,<2.0a0
 - numpydoc>=1.5
+- nvtx-c >=3.1.0
 - openslide-python>=1.3.0
 - pip
 - pooch>=1.6.0
 - pre-commit
 - psutil>=5.8.0
+- pybind11
+- pybind11_json
 - pydata-sphinx-theme
 - pytest-cov>=2.12.1
 - pytest-lazy-fixture>=0.6.3
@@ -46,6 +55,7 @@ dependencies:
 - scipy>=1.6.0
 - sphinx<6
 - sysroot_linux-64==2.17
+- taskflow
 - tifffile>=2022.7.28
 - xz
 - yasm

conda/recipes/libcucim/meta.yaml

@@ -74,10 +74,19 @@ requirements:
     - libnvjpeg-dev
     - libnvjpeg-static
     {% endif %}
+    - boost-cpp
+    - catch2
+    - cli11
+    - fmt
     - jbig
+    - libabseil
     - libwebp-base
     - nvtx-c >=3.1.0
+    - nlohmann_json
     - openslide
+    - pybind11
+    - pybind11_json
+    - taskflow
     - xz
     - zlib
     - zstd

dependencies.yaml

@@ -101,6 +101,18 @@ dependencies:
       - output_types: [requirements, pyproject]
         packages:
           - wheel
+      - output_types: [conda]
+        packages:
+          - boost-cpp
+          - catch2
+          - cli11
+          - fmt
+          - libabseil
+          - nvtx-c >=3.1.0
+          - nlohmann_json
+          - pybind11
+          - pybind11_json
+          - taskflow
     specific:
       - output_types: conda
         matrices: