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updated readme
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ravel-lab committed Sep 6, 2024
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25 changes: 13 additions & 12 deletions README.md
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Expand Up @@ -22,17 +22,7 @@ This software runs on **Linux** or **MacOSX**. See specific executables within b
unzip vSpeciateDB_models/vSpeciateIT_V3V4
unzip vSpeciateDB_models/vSpeciateIT_V4V4

5. From parent directory of cloned repository ("speciateIT" or location of "Makefile")

make all

This will compile all classification scripts.

NOTE1: May require "sudo" to access /usr/local/bin
sudo make all
NOTE2: All Makefile's are configured for either linux or macosx.

6. Add classify to PATH:
4. Add classify to PATH:

export PATH="/path/to/speciateIT/bin/:$PATH"

Expand Down Expand Up @@ -64,5 +54,16 @@ ASV6 Lactobacillus_crispatus 0.965138 50
ASV7 Lactobacillus_iners 0.973368 50
ASV8 Fannyhessea_vaginae 0.984829 24
ASV9 Leptotrichia_shahii 0.916945 26
ASV10 Megasphaera_lornae 0.973400 27
ASV10 Megasphaera_lornae 0.973400 27

TO COMPILE FROM SOURCE: From src directories (either macosx or linux) of cloned repository.

make all

This will compile all classification scripts.

NOTE1: May require "sudo" to access /usr/local/bin
sudo make all
NOTE2: All Makefile's are configured for either linux or macosx.

</pre>

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