Utilities to mine clinical variant info
variants_for_return.pl - Return variants specified by input *ID.txt list from affy tab delimited txt file for review
rsidtovid.pl - takes a list of rsids, removes dulicates, fetches variation ids from ClinVar
listed_columns.pl - grabs a subset of columns from a tab separated text file(s)
file_compare.pl - File::Compare quick usage script
convertrsid2annovar.pl - use rsID list as input to generate Annovar (Wang, 2010) avinput file
conflicting_inter_score.pl - takes Clean table from new_clinvar_parse.pl, adds a summed conflicting interpretations score column for the Submission_Details field
Wang K, Li M, Hakonarson H. ANNOVAR: Functional annotation of genetic variants from next-generation sequencing data Nucleic Acids Research, 38:e164, 2010