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@rnajena

RNA Bioinformatics and High-Throughput Analysis Jena

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  1. bertax bertax Public

    Taxonomic classification of DNA sequences

    Python 50 7

  2. poseidon poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    C 35 9

  3. vidhop vidhop Public

    VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.

    Python 18 8

  4. viralclust viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    Nextflow 16 5

  5. EpiDope EpiDope Public

    Prediction of B-cell epitopes from amino acid sequences using deep neural networks.

    Python 15 5

  6. read5 read5 Public

    Wrapper to read fast5, slow5, blow5 and pod5 files.

    Python 9 1

Repositories

Showing 10 of 21 repositories
  • sugar Public

    S*R -- A Python framework for bioinformatics

    rnajena/sugar’s past year of commit activity
    Python 2 0 0 0 Updated Nov 6, 2024
  • poseidon Public

    PoSeiDon: positive selection detection and recombination analysis pipeline

    rnajena/poseidon’s past year of commit activity
    C 35 MIT 9 10 (1 issue needs help) 0 Updated Oct 28, 2024
  • anchorna Public

    Find anchors in RNA/DNA sequences

    rnajena/anchorna’s past year of commit activity
    Python 0 0 0 0 Updated Oct 24, 2024
  • pcago-unified Public

    PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.

    rnajena/pcago-unified’s past year of commit activity
    R 1 3 1 0 Updated Sep 18, 2024
  • RNAswarm Public

    RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies

    rnajena/RNAswarm’s past year of commit activity
    Python 2 MIT 1 1 0 Updated Sep 11, 2024
  • bertax Public

    Taxonomic classification of DNA sequences

    rnajena/bertax’s past year of commit activity
    Python 50 GPL-3.0 7 5 0 Updated Jul 2, 2024
  • viralclust Public

    Small pipeline to cluster viral genomes based on their k-mer content. WiP

    rnajena/viralclust’s past year of commit activity
    Nextflow 16 GPL-3.0 5 7 0 Updated Jun 18, 2024
  • bertax_training Public

    Training scripts for BERTax

    rnajena/bertax_training’s past year of commit activity
    Python 8 4 1 0 Updated Jun 12, 2024
  • pcago Public

    Interactive web service that allows analysis of RNA-Seq read count data with PCA and clustering.

    rnajena/pcago’s past year of commit activity
    R 0 GPL-3.0 0 5 0 Updated May 31, 2024
  • pcago-electron Public

    Runs PCAGO as standalone desktop application using the Electron framework.

    rnajena/pcago-electron’s past year of commit activity
    JavaScript 0 GPL-3.0 0 0 0 Updated May 31, 2024
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