update news, cran comments, and codemeta.json

DESCRIPTION

@@ -5,7 +5,7 @@ Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
     species names, getting taxonomic hierarchies, fetching downstream and
     upstream taxonomic names, getting taxonomic synonyms, converting
     scientific to common names and vice versa, and more.
-Version: 0.9.92.97
+Version: 0.9.93
 License: MIT + file LICENSE
 URL: https://docs.ropensci.org/taxize (website),
     https://github.com/ropensci/taxize (devel),

NEWS.md

@@ -1,3 +1,31 @@
+taxize 0.9.93
+=============
+
+### DEFUNCT
+
+* `use_eol()` is now defunct; EOL no longer requires an API key (#749) (#803) thanks @padpadpadpad
+
+### NEW FEATURES
+
+* http to https upgrades for the following functions: `vascan_search()`, `taxize_cite()`, all `*_ping()` functions, `get_wormsid()`, `get_pow()`, `get_eolid()`, `get_gbifid()`, `get_boldid()`, `gbif_name_usage()`; and in various places in documentation (#799)
+
+### MINOR IMPROVEMENTS
+
+* `classification.uid()` now does batch HTTP requests. NCBI Entrez web service allows requests with up to 50 identifiers; @zachary-foster did the work to make this method now use batch queries so its much faster (#678) (#798)
+* `class2tree()` improvement in taxonomy rank indexing (#805) work by @trvinh
+* fix to description of `taxon_state_messages` parameter in the `taxize_options` help file  (#806)
+* taxize package datasets now loaded into a package environment (#792)
+
+### BUG FIXES
+
+* `ncbi_children()` now accepts numeric and character class ids (#800)
+* fix `classification.gbifid()`, was failing because GBIF changed the order of results (#802)
+* `class2tree()` fix: problem was due ultimately to a bug in `classification.gbifid()` (see line above)  (#801)
+* `tax_rank()` fix - for `db="ncbi"` was not giving correct ranks for queried names - was due to a change in `classification.uid` (#804)
+* fix bug in `get_eolid()` when filtering by data source lead to no results (#808)
+* fix for `ncbi_downstream` (and thereby fix for `downstream()` with `db="ncbi"`): for some taxa a query to NCBI resulted in children as well the queried name itself, and the next query would give the same results, leading to an endless while loop - now we remove the taxon itself that was queried to prevent this (#807)
+
+
 taxize 0.9.92
 =============
 

codemeta.json

@@ -10,14 +10,14 @@
   "codeRepository": "https://github.com/ropensci/taxize",
   "issueTracker": "https://github.com/ropensci/taxize/issues",
   "license": "https://spdx.org/licenses/MIT",
-  "version": "0.9.92",
+  "version": "0.9.93",
   "programmingLanguage": {
     "@type": "ComputerLanguage",
     "name": "R",
-    "version": "3.6.2",
+    "version": "3.6.3",
     "url": "https://r-project.org"
   },
-  "runtimePlatform": "R version 3.6.2 Patched (2020-02-04 r77774)",
+  "runtimePlatform": "R version 3.6.3 Patched (2020-02-29 r77909)",
   "provider": {
     "@id": "https://cran.r-project.org",
     "@type": "Organization",
@@ -447,10 +447,10 @@
       "sameAs": "https://CRAN.R-project.org/package=phangorn"
     }
   ],
-  "contIntegration": ["https://travis-ci.org/ropensci/taxize", "https://ci.appveyor.com/project/sckott/taxize-175/branch/master", "https://codecov.io/github/ropensci/taxize?branch=master"],
+  "contIntegration": ["https://travis-ci.org/ropensci/taxize", "https://ci.appveyor.com/project/sckott/taxize-175/branch/master"],
   "releaseNotes": "https://github.com/ropensci/taxize/blob/master/NEWS.md",
   "readme": "https://github.com/ropensci/taxize/blob/master/README.md",
-  "fileSize": "1311.097KB",
+  "fileSize": "1573.58KB",
   "citation": [
     {
       "@type": "ScholarlyArticle",
@@ -580,5 +580,6 @@
     "https://taxize.dev",
     "https://docs.ropensci.org/taxize"
   ],
-  "copyrightHolder": {}
+  "copyrightHolder": {},
+  "developmentStatus": "https://www.repostatus.org/#active"
 }

cran-comments.md

@@ -1,7 +1,7 @@
 ## Test environments
 
-* local OS X install, R 3.6.2 Patched
-* ubuntu 16.04 (on travis-ci), R 3.6.2
+* local OS X install, R 3.6.3 Patched
+* ubuntu 16.04 (on travis-ci), R 3.6.3
 * win-builder (devel and release)
 
 ## R CMD check results
@@ -12,11 +12,11 @@
 
 * I have run R CMD check on the 22 downstream dependencies
 (<https://github.com/ropensci/taxize/blob/master/revdep/README.md>);
-there was an error in one package (spocc, also maintained by me) but only in the development version on GitHub, which I've fixed and a new version will be submitted soon.
+there was no errors.
 
 ------
 
-This version includes a new function for parsing scientific names, drops 3 package imports, and makes many bug fixes.
+This version includes a defunction function, and many bug fixes.
 
 Thanks!
 Scott Chamberlain