fixes #1408 #1716

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3 errors and 4 warnings

(subscript) logical subscript too long

R CMD check found ERRORs

Process completed with exit code 1.

file 'terra/cleanup' did not have execute permissions: corrected

file 'terra/configure' did not have execute permissions: corrected

Undocumented S4 methods:

Found the following shell script(s) with CR or CRLF line endings:

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