Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Add "P" special Number character for FORMAT #442

Closed
wants to merge 1 commit into from
+6 −1
Closed

Add "P" special Number character for FORMAT #442

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file modified VCFv4.3.pdf
View file
Open in desktop
Binary file not shown.
7 changes: 6 additions & 1 deletion VCFv4.3.tex
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -170,7 +170,12 @@ \subsubsection{Individual format field format}
##FORMAT=<ID=ID,Number=number,Type=type,Description="description">
\end{verbatim}

Possible Types for FORMAT fields are: Integer, Float, Character, and String (this field is otherwise defined precisely as the INFO field).
Possible Types for FORMAT fields are: Integer, Float, Character, and String. This field is otherwise defined as the INFO field, with the addition of special characters used to define the Number entry:

\begin{itemize}
\item P: The field has one value per GT entry (i.e. ploidy), or zero if GT is missing.
The values must be in the same order as listed in the GT field.
\end{itemize}

\subsubsection{Alternative allele field format}
Symbolic alternate alleles are described as follows:
Expand Down
Loading