build: bump the python-dependencies group across 2 directories with 3 updates

[dependabot]

Bumps the python-dependencies group with 3 updates in the / directory: pytest-cov, numpy and setuptools.
Bumps the python-dependencies group with 1 update in the /tests directory: pytest-cov.

Updates pytest-cov from 5.0.0 to 6.0.0

Changelog

Sourced from pytest-cov's changelog.

6.0.0 (2024-10-29)

• Updated various documentation inaccuracies, especially on subprocess handling.
• Changed fail under checks to use the precision set in the coverage configuration. Now it will perform the check just like coverage report would.
• Added a --cov-precision cli option that can override the value set in your coverage configuration.
• Dropped support for now EOL Python 3.8.

Commits

• 9540437 Bump version: 5.0.0 → 6.0.0
• 9f81754 Further trim down envs and drop Python 3.8.
• b12b5ec Update conf.
• 23f4b27 Update changelog.
• 291a04f Bump test deps and trim config.
• 08f1101 Add --cov-precision option. Close #655.
• 76fe2a7 Move the warnings/errors in a place that doesn't import anything.
• a9ea7b7 Implement error/warning for the bad dynamic_context being set in config.
• c299e01 Add explicit suffixing to make it easier to see the identify the sources/usag...
• c87e546 Add reproducer for weird xdist dynamic_context interaction. Ref #604.
• Additional commits viewable in compare view

Updates numpy from 2.1.2 to 2.1.3

Release notes

Sourced from numpy's releases.

2.1.3 (Nov 2, 2024)

NumPy 2.1.3 Release Notes

NumPy 2.1.3 is a maintenance release that fixes bugs and regressions discovered after the 2.1.2 release. This release also adds support for free threaded Python 3.13 on Windows.

The Python versions supported by this release are 3.10-3.13.

Improvements

• Fixed a number of issues around promotion for string ufuncs with StringDType arguments. Mixing StringDType and the fixed-width DTypes using the string ufuncs should now generate much more uniform results.

  (gh-27636)

Changes

• numpy.fix now won't perform casting to a floating data-type for integer and boolean data-type input arrays.

  (gh-26766)

Contributors

A total of 15 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

• Abhishek Kumar +
• Austin +
• Benjamin A. Beasley +
• Charles Harris
• Christian Lorentzen
• Marcel Telka +
• Matti Picus
• Michael Davidsaver +
• Nathan Goldbaum
• Peter Hawkins
• Raghuveer Devulapalli
• Ralf Gommers
• Sebastian Berg
• dependabot[bot]
• kp2pml30 +

Pull requests merged

A total of 21 pull requests were merged for this release.

... (truncated)

Commits

• 98464cc Merge pull request #27690 from charris/prepare-2.1.3
• cbda85b REL: Prepare for the NumPy 2.1.3 release [wheel build]
• daa8699 Merge pull request #27672 from charris/backport-27666
• 614ca19 Merge pull request #27673 from charris/backport-27636
• e6b02d7 DOC: add release note
• 54fd729 BUG: substantially simplify and fix issue with justification promoter
• a90fe7c BUG: fix more issues with string ufunc promotion
• a121864 BUG: fixes for StringDType/unicode promoters
• f055fb9 BUG: Fix a reference count leak in npy_find_descr_for_scalar.
• 5895c02 Merge pull request #27669 from charris/backport-27663
• Additional commits viewable in compare view

Updates setuptools from 75.2.0 to 75.3.0

Changelog

Sourced from setuptools's changelog.

v75.3.0

Features

• Allowed using dict as an ordered type in setuptools.dist.check_requirements -- by :user:Avasam (#4575)

Bugfixes

• Ensured methods in setuptools.modified preferably raise a consistent distutils.errors.DistutilsError type (except in the deprecated use case of SETUPTOOLS_USE_DISTUTILS=stdlib) -- by :user:Avasam (#4567)
• Fix the ABI tag when building a wheel using the debug build of Python 3.13 on Windows. Previously, the ABI tag was missing the "d" flag. (#4674)
• Fix clashes for optional-dependencies in pyproject.toml and extra_requires in setup.cfg/setup.py. As per PEP 621, optional-dependencies have to be honoured and dynamic behaviour is not allowed. (#4696)

Misc

• #4560

Commits

• d8da7df Bump version: 75.2.0 → 75.3.0
• a21c7fa Fix grammar in news fragment
• a9a79e7 Fix wheel ABI tag for debug Python 3.13 on Windows (#4676)
• 0bc3248 Merge simple type annotations from typeshed (#4504)
• 1155ca8 Fix wheel ABI tag for debug Python 3.13 on Windows
• 1ca55c9 Workaround for clash between ruff in pre-commit hook and pytest-ruff (#...
• c498d16 Satisfy ruff linter - automatic fix
• 1f92af5 Sync pre-commit-hook with version of ruff that gets automatically pulled in t...
• a39336b Ruff: enable all pyflakes and perf rules (#4556)
• e5f16a2 bump jaraco.test to py.typed version 5.5 in test extra (#4651)
• Additional commits viewable in compare view

Updates pytest-cov from 5.0.0 to 6.0.0

Changelog

Sourced from pytest-cov's changelog.

6.0.0 (2024-10-29)

• Updated various documentation inaccuracies, especially on subprocess handling.
• Changed fail under checks to use the precision set in the coverage configuration. Now it will perform the check just like coverage report would.
• Added a --cov-precision cli option that can override the value set in your coverage configuration.
• Dropped support for now EOL Python 3.8.

Commits

• 9540437 Bump version: 5.0.0 → 6.0.0
• 9f81754 Further trim down envs and drop Python 3.8.
• b12b5ec Update conf.
• 23f4b27 Update changelog.
• 291a04f Bump test deps and trim config.
• 08f1101 Add --cov-precision option. Close #655.
• 76fe2a7 Move the warnings/errors in a place that doesn't import anything.
• a9ea7b7 Implement error/warning for the bad dynamic_context being set in config.
• c299e01 Add explicit suffixing to make it easier to see the identify the sources/usag...
• c87e546 Add reproducer for weird xdist dynamic_context interaction. Ref #604.
• Additional commits viewable in compare view

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