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run notebook (individual) #72

run notebook (individual)

run notebook (individual) #72

name: run notebook (individual)
on:
workflow_dispatch:
inputs:
notebook:
description: "Path to the notebook to run"
required: true
type: choice
options: # not including R tutorials currently
- atac/PeakVI.ipynb
- atac/PoissonVI.ipynb
- atac/scbasset_batch.ipynb
- atac/scbasset.ipynb
- dev/data_tutorial.ipynb
- dev/model_user_guide.ipynb
- dev/module_user_guide.ipynb
- hub/cellxgene_census_model.ipynb
- hub/minification.ipynb
- hub/scvi_hub_intro_and_download.ipynb
- hub/scvi_hub_upload_and_large_files.ipynb
- multimodal/cite_scrna_integration_w_totalVI.ipynb
- multimodal/MultiVI_tutorial.ipynb
- multimodal/totalVI_reference_mapping.ipynb
- multimodal/totalVI.ipynb
- quick_start/api_overview.ipynb
- quick_start/data_loading.ipynb
- scrna/amortized_lda.ipynb
- scrna/AutoZI_tutorial.ipynb
- scrna/cellassign_tutorial.ipynb
- scrna/contrastiveVI_tutorial.ipynb
- scrna/harmonization.ipynb
- scrna/linear_decoder.ipynb
- scrna/query_hlca_knn.ipynb
- scrna/scanvi_fix.ipynb
- scrna/scarches_scvi_tools.ipynb
- scrna/scVI_DE_worm.ipynb
- scrna/seed_labeling.ipynb
- scrna/tabula_muris.ipynb
- scrna/MrVI_tutorial.ipynb
- spatial/cell2location_lymph_node_spatial_tutorial.ipynb
- spatial/DestVI_tutorial.ipynb
- spatial/gimvi_tutorial.ipynb
- spatial/stereoscope_heart_LV_tutorial.ipynb
- spatial/tangram_scvi_tools.ipynb
- tuning/autotune_scvi.ipynb
version:
description: "latest/stable/semver/branch"
required: true
type: string
jobs:
notebook:
uses: ./.github/workflows/run_notebook.yaml
with:
notebook: ${{ inputs.notebook }}
version: ${{ inputs.version }}