Fix LGBM issues in build #1852
Workflow file for this run
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| name: build | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - "master" | |
| - "develop" | |
| workflow_call: | |
| concurrency: | |
| # This will cancel outdated runs on the same pull-request, but not runs for other triggers | |
| group: ${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| env: | |
| # The only way to simulate if-else statement | |
| CHECKOUT_BRANCH: ${{ github.event_name == 'schedule' && 'develop' || github.ref }} | |
| jobs: | |
| check-pre-commit-hooks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ env.CHECKOUT_BRANCH }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.8" | |
| - uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --all-files --verbose | |
| check-code-pylint-and-mypy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ env.CHECKOUT_BRANCH }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.8" | |
| # cache: pip # uncomment when all requirements are in `pyproject.toml` | |
| # caching the entire environment is faster when cache exists but slower for cache creation | |
| - name: Install packages | |
| run: | | |
| pip install -r requirements-dev.txt --upgrade --upgrade-strategy eager | |
| python install_all.py | |
| pip install -r ml_tools/requirements-tdigest.txt | |
| - name: Run pylint | |
| run: make pylint | |
| - name: Run mypy | |
| if: success() || failure() | |
| run: | | |
| mypy \ | |
| core/eolearn/core \ | |
| coregistration/eolearn/coregistration \ | |
| geometry/eolearn/geometry \ | |
| features/eolearn/features \ | |
| io/eolearn/io \ | |
| mask/eolearn/mask \ | |
| ml_tools/eolearn/ml_tools \ | |
| visualization/eolearn/visualization | |
| test-on-github: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| include: | |
| # A flag marks whether full or partial tests should be run | |
| # We don't run integration tests on pull requests from outside repos, because they don't have secrets | |
| - python-version: "3.8" | |
| full_test_suite: ${{ github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository }} | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ env.CHECKOUT_BRANCH }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| # cache: pip # uncomment when all requirements are in `pyproject.toml` | |
| - name: Install packages | |
| if: matrix.python-version != '3.9' | |
| run: | | |
| pip install -r requirements-dev.txt --upgrade --upgrade-strategy eager | |
| python install_all.py -e | |
| - name: Install zarr backend # this will run Zarr backend tests on 3.9 | |
| if: matrix.python-version == '3.9' | |
| run: | | |
| pip install -r requirements-dev.txt -r core/requirements-zarr.txt --upgrade --upgrade-strategy eager | |
| python install_all.py -e | |
| - name: Run full tests and code coverage | |
| if: ${{ matrix.full_test_suite }} | |
| run: | | |
| sentinelhub.config \ | |
| --sh_client_id "${{ secrets.SH_CLIENT_ID }}" \ | |
| --sh_client_secret "${{ secrets.SH_CLIENT_SECRET }}" | |
| if [ ${{ github.event_name }} == 'push' ]; then | |
| pytest -m "not geopedia" --cov --cov-report=term --cov-report=xml | |
| else | |
| pytest -m "not geopedia" | |
| fi | |
| - name: Run reduced tests | |
| if: ${{ !matrix.full_test_suite }} | |
| run: pytest -m "not sh_integration and not geopedia" | |
| - name: Upload code coverage | |
| if: ${{ matrix.full_test_suite && github.event_name == 'push' }} | |
| uses: codecov/codecov-action@v2 | |
| with: | |
| files: coverage.xml | |
| fail_ci_if_error: true | |
| verbose: false | |
| mirror-and-integration-test-on-gitlab: | |
| if: github.event_name == 'push' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v1 | |
| - name: Mirror + trigger CI | |
| uses: SvanBoxel/gitlab-mirror-and-ci-action@master | |
| with: | |
| args: "https://git.sinergise.com/eo/code/eo-learn/" | |
| env: | |
| GITLAB_HOSTNAME: "git.sinergise.com" | |
| GITLAB_USERNAME: "github-action" | |
| GITLAB_PASSWORD: ${{ secrets.GITLAB_PASSWORD }} | |
| GITLAB_PROJECT_ID: "164" | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |