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use new gh-pages deploy action
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katosh committed Jun 18, 2024
1 parent de5690f commit 331889e
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6 changes: 2 additions & 4 deletions .github/workflows/R-CMD-check.yaml
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Expand Up @@ -51,13 +51,11 @@ jobs:
shell: Rscript {0}

- name: Deploy to GitHub Pages
uses: peaceiris/actions-gh-pages@v3
uses: peaceiris/actions-gh-pages@v4
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: ./docs
publish_branch: gh-pages # Ensure it deploys to the gh-pages branch
user_name: 'github-actions[bot]'
user_email: 'github-actions[bot]@users.noreply.github.com'
publish_branch: gh-pages

- name: Test coverage
run: |
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1 change: 0 additions & 1 deletion .gitignore
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Expand Up @@ -60,5 +60,4 @@ __pycache__/
*.h5ad

# generated website
docs/
docs
2 changes: 1 addition & 1 deletion _pkgdown.yml
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Expand Up @@ -8,7 +8,7 @@ authors:

home:
title: "convert2anndata"
description: |
description: >
An R package to convert SingeCellExperiment and Seurat objects into
anndata as comprehensively as possible.
path: README.md

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