update CI

settylab · May 31, 2024 · 96bf0a8 · 96bf0a8
1 parent 4704da2
commit 96bf0a8
Showing 1 changed file with 17 additions and 5 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -1,6 +1,10 @@
 name: R-CMD-check
 
-on: [push, pull_request]
+on:
+  push:
+  pull_request:
+    branches:
+      - '**'
 
 jobs:
   R-CMD-check:
@@ -17,10 +21,14 @@ jobs:
       - name: Set up R
         uses: r-lib/actions/setup-r@v2
 
-      - name: Install dependencies
+      - name: Install Bioconductor packages
         run: |
           install.packages('BiocManager')
           BiocManager::install(c('SingleCellExperiment', 'SummarizedExperiment', 'S4Vectors', 'Matrix'))
+        shell: Rscript {0}
+
+      - name: Install CRAN dependencies
+        run: |
           install.packages('remotes')
           remotes::install_deps(dependencies = TRUE)
         shell: Rscript {0}
@@ -30,10 +38,14 @@ jobs:
           remotes::install_local()
         shell: Rscript {0}
 
+      - name: Check package
+        run: |
+          R CMD check --no-manual --as-cran .
+        shell: bash
+
       - name: Test coverage
         run: |
-          install.packages('covr')
-          covr::codecov()
+          Rscript -e 'install.packages("covr"); covr::codecov()'
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        shell: Rscript {0}
+        shell: bash