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udpate doc
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shenwei356 committed Aug 20, 2016
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10 changes: 5 additions & 5 deletions README.md
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Expand Up @@ -83,27 +83,27 @@ Go to [Download Page](http://shenwei356.github.io/seqkit/downlaod) for more down
executable binary files **for most popular operating systems** are freely available
in [release](https://github.com/shenwei356/seqkit/releases) page.

Just [download](https://github.com/shenwei356/csvtk/releases) compressed
Just [download](https://github.com/shenwei356/seqkit/releases) compressed
executable file of your operating system,
and uncompress it with `tar -zxvf *.tar.gz` command or other tools.
And then:

1. **For Linux-like systems**
1. If you have root privilege simply copy it to `/usr/local/bin`:

sudo cp csvtk /usr/local/bin/
sudo cp seqkit /usr/local/bin/

1. Or add the directory of the executable file to environment variable
`PATH`:

echo export PATH=\$PATH:/PATH/OF/csvtk >> ~/.bashrc
echo export PATH=\$PATH:/PATH/OF/seqkit >> ~/.bashrc


1. **For windows**, just copy `csvtk.exe` to `C:\WINDOWS\system32`.
1. **For windows**, just copy `seqkit.exe` to `C:\WINDOWS\system32`.

For Go developer, just one command:

go get -u github.com/shenwei356/csvtk/csvtk
go get -u github.com/shenwei356/seqkit/seqkit

## Subcommands

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2 changes: 1 addition & 1 deletion doc/docs/benchmark.md
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@@ -1,4 +1,4 @@
# Benchmark
# Benchmark


## Softwares
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2 changes: 1 addition & 1 deletion doc/docs/tutorial.md
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Expand Up @@ -334,7 +334,7 @@ For human miRNA hairpins
A distribution ploting script is used, (
[plot_distribution.py](https://github.com/shenwei356/bio_scripts/blob/master/plot/plot_distribution.py) )

$ seqkit fx2tab hairpin.id_hsa.fa.gz -l | cut -f 3 | plot_distribution.py -o hairpin.id_hsa.fa.gz.lendist.png
$ seqkit fx2tab hairpin.id_hsa.fa.gz -l | cut -f 4 | plot_distribution.py -o hairpin.id_hsa.fa.gz.lendist.png

![hairpin.id_hsa.fa.gz.lendist.png](/files/hairpin/hairpin.id_hsa.fa.gz.lendist.png)

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2 changes: 1 addition & 1 deletion doc/mkdocs.yml
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Expand Up @@ -9,7 +9,7 @@ pages:
- Links:
- Wei Shen's Bioinformatic tools: bioinf.md
- YanLi Lab: yanlilab.md
theme: mkdocs
theme: yeti

repo_url: https://github.com/shenwei356/seqkit
site_description: SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
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2 changes: 1 addition & 1 deletion doc/site
Submodule site updated from 463f2e to b7bdf1

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