Merge pull request #765 from slaclab/v4.11.7_candidate

Limit size of running SystemLog variable

.flake8

@@ -0,0 +1,34 @@
+[flake8]
+exclude = __init__.py, rogue_plugin.py
+#############################################################
+# Note: Command to remove white space at the end of lines
+# $ find . -type f -name "*.py" -print0 | xargs -0 sed -i 's/\s*$//g'
+#############################################################
+# E116 unexpected indentation (comment)
+# E128 continuation line under-indented for visual indent
+# E131 continuation line unaligned for hanging indent
+# E201 whitespace after '('
+# E202 whitespace before ')'
+# E203 whitespace before ':'
+# E211 whitespace before '('
+# E221 multiple spaces before operator
+# E222 multiple spaces after operator
+# E225 missing whitespace around operator
+# E226 missing whitespace around arithmetic operator
+# E227 missing whitespace around bitwise or shift operator
+# E228 missing whitespace around modulo operator
+# E231 missing whitespace after ','
+# E241 multiple spaces after ','
+# E251 unexpected spaces around keyword / parameter equals
+# E261 at least two spaces before inline comment
+# E262 inline comment should start with '# '
+# E265 block comment should start with '# '
+# E266 too many leading '#' for block comment
+# E272 multiple spaces before keyword
+# E302 expected 2 blank lines, found 1
+# E303 too many blank lines
+# E305 expected 2 blank lines after class or function definition
+# E306 expected 1 blank line before a nested definition, found 0
+# E501 line too long
+#############################################################
+ignore = E116,E128,E131,E201,E202,E203,E211,E221,E222,E225,E226,E227,E228,E231,E241,E251,E261,E262,E265,E266,E272,E302,E303,E305,E306,E501

.github/workflows/rogue_ci.yml

@@ -0,0 +1,299 @@
+# ----------------------------------------------------------------------------
+# Title      : ROGUE GitHub Actions Script
+# ----------------------------------------------------------------------------
+# This file is part of the rogue software package. It is subject to
+# the license terms in the LICENSE.txt file found in the top-level directory
+# of this distribution and at:
+#    https://confluence.slac.stanford.edu/display/ppareg/LICENSE.html.
+# No part of the rogue software package, including this file, may be
+# copied, modified, propagated, or distributed except according to the terms
+# contained in the LICENSE.txt file.
+# ----------------------------------------------------------------------------
+# The following environment variables are required for this process:
+# secrets.GH_TOKEN
+# secrets.CONDA_UPLOAD_TOKEN_DEV
+# secrets.CONDA_UPLOAD_TOKEN_TAG
+# secrets.DOCKERHUB_TOKEN
+
+name: Rogue Integration
+on: [push]
+
+jobs:
+  full_build_test:
+    name: Full Build Test
+    runs-on: ubuntu-latest
+    steps:
+
+      # This step checks out a copy of your repository.
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: Setup Environment
+        run: |
+          EPICS_BASE=${HOME}/packages/epics/base-7.0.3
+          EPICS_PCAS_ROOT=${HOME}/packages/pcas/pcas-4.13.2
+          LD_LIBRARY_PATH=/usr/lib:${EPICS_BASE}/lib/linux-x86_64:${EPICS_PCAS_ROOT}/lib/linux-x86_64
+          echo "EPICS_BASE=$EPICS_BASE" >> $GITHUB_ENV
+          echo "EPICS_PCAS_ROOT=$EPICS_PCAS_ROOT" >> $GITHUB_ENV
+          echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV
+
+      - name: Install dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install doxygen doxygen-doc libzmq3-dev libboost-all-dev
+          python -m pip install --upgrade pip
+          pip install setuptools
+          pip install -r pip_requirements.txt
+          pip install codecov coverage pytest-cov flake8
+
+      - name: Install EPICS Base
+        run: |
+          mkdir -p ${EPICS_BASE}
+          cd ${EPICS_BASE}
+          pwd
+          wget -O base-7.0.3.tar.gz  https://github.com/epics-base/epics-base/archive/R7.0.3.tar.gz
+          tar xzf base-7.0.3.tar.gz --strip 1
+          make clean && make && make install
+
+      - name: Install EPICS PCAS
+        run: |
+          mkdir -p ${EPICS_PCAS_ROOT}
+          cd ${EPICS_PCAS_ROOT}
+          wget -O pcas-4.13.2.tar.gz https://github.com/epics-modules/pcas/archive/v4.13.2.tar.gz
+          tar xzf pcas-4.13.2.tar.gz --strip 1
+          echo "EPICS_BASE=$EPICS_BASE" >> configure/RELEASE.local
+          make clean && make && make install
+
+      # Rogue
+      - name: Build Rogue
+        run: |
+          python -c "import numpy; print(numpy.get_include())"
+          mkdir build; cd build
+          cmake .. -DROGUE_INSTALL=local
+          make -j4 install
+
+      # Run Tests
+      - name: Rogue Tests
+        run: |
+          source setup_rogue.sh
+          python -m pytest --cov
+
+      # Flake 8 check
+      - name: Flake8 Tests
+        run: |
+          source setup_rogue.sh
+          python -m compileall -f ./python/
+          #flake8 --count ./python/
+
+      # Code Coverage
+      - name: Code Coverage
+        run: |
+          source setup_rogue.sh
+          codecov
+          coverage report -m
+
+      # Generate Documentation
+      - name: Generate Documentation
+        if: github.ref == 'refs/heads/documentation'
+        run: |
+          source setup_rogue.sh
+          cd docs
+          make html
+
+      - name: Deploy Documentation
+        if: github.ref == 'refs/heads/documentation'
+        uses: peaceiris/actions-gh-pages@v3
+        with:
+          github_token: ${{ secrets.GH_TOKEN }}
+          publish_dir: docs/build/html
+
+  small_build_test:
+    name: Small Build Test
+    runs-on: ubuntu-latest
+    steps:
+
+      # This step checks out a copy of your repository.
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - name: Install dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install libzmq3-dev
+
+      # Rogue
+      - name: Build Rogue
+        run: |
+          mkdir build; cd build
+          cmake .. -DROGUE_INSTALL=local -DNO_PYTHON=1 -DSTATIC_LIB=1
+          make -j4 install
+
+  gen_release:
+    name: Generate Release
+    runs-on: ubuntu-latest
+    needs: [full_build_test, small_build_test]
+    if: startsWith(github.ref, 'refs/tags/')
+    steps:
+
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: Get Image Information
+        id: get_image_info
+        run: |
+          echo ::set-output name=tag::`git describe --tags`
+
+      - name: Get Ruckus
+        run: |
+          git clone https://github.com/slaclab/ruckus.git
+          python -m pip install --upgrade pip
+          pip install -r ruckus/scripts/pip_requirements.txt
+
+      - name: Gen Release
+        env:
+          TRAVIS_REPO_SLUG: ${{ github.repository }}
+          TRAVIS_TAG: ${{ steps.get_image_info.outputs.tag }}
+          GH_REPO_TOKEN: ${{ secrets.GH_TOKEN }}
+        run: |
+          python ruckus/scripts/releaseGen.py
+
+  conda_build:
+    name: Anaconda Build
+    needs: [full_build_test, small_build_test]
+    if: startsWith(github.ref, 'refs/tags/') || github.ref == 'refs/heads/pre-release'
+    strategy:
+      matrix:
+        os:
+          - ubuntu-latest
+          - macos-10.15
+    runs-on: ${{ matrix.os }}
+    steps:
+
+      # This step checks out a copy of your repository.
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - uses: actions/setup-python@v2
+        with:
+          python-version: 3.8
+
+      - name: Setup anaconda
+        env:
+          OS_NAME: ${{ matrix.os }}
+        run: |
+          cd ${HOME}
+          if [ $OS_NAME == "macos-10.15" ]
+          then
+            wget -O miniconda.sh https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh
+          else
+            wget -O miniconda.sh https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
+          fi
+          bash miniconda.sh -b -p ${HOME}/miniconda
+          export PATH="${HOME}/miniconda/bin:$PATH"
+          source ${HOME}/miniconda/etc/profile.d/conda.sh
+          conda config --set always_yes yes
+          conda install conda-build anaconda-client conda-verify
+          if [ $OS_NAME == "macos-10.15" ]
+          then
+            conda install libiconv libarchive -c conda-forge
+          fi
+          conda update -q conda conda-build
+          conda update --all
+
+      - name: Setup MacOS
+        if: matrix.os == 'macos-10.15'
+        run: |
+          cd ${HOME}
+          wget https://github.com/phracker/MacOSX-SDKs/releases/download/10.15/MacOSX10.15.sdk.tar.xz
+          tar xzf MacOSX10.15.sdk.tar.xz
+          sudo mkdir -p /opt/
+          sudo mv MacOSX10.15.sdk /opt/
+          CONDA_BUILD_SYSROOT=/opt/MacOSX10.15.sdk
+          CONDA_BUILD=1
+          echo "CONDA_BUILD_SYSROOT=$CONDA_BUILD_SYSROOT" >> $GITHUB_ENV
+          echo "CONDA_BUILD=$CONDA_BUILD" >> $GITHUB_ENV
+
+      - name: Get Image Information
+        id: get_image_info
+        env:
+          CONDA_UPLOAD_TOKEN_DEV: ${{ secrets.CONDA_UPLOAD_TOKEN_DEV }}
+          CONDA_UPLOAD_TOKEN_TAG: ${{ secrets.CONDA_UPLOAD_TOKEN_TAG }}
+          OS_NAME: ${{ matrix.os }}
+        run: |
+          if [ ${GITHUB_REF} == "refs/heads/pre-release" ]
+          then
+              echo ::set-output name=token::$CONDA_UPLOAD_TOKEN_DEV
+          else
+              echo ::set-output name=token::$CONDA_UPLOAD_TOKEN_TAG
+          fi
+          if [ ${OS_NAME} == "macos-10.15" ]
+          then
+              echo ::set-output name=os::osx-64
+          else
+              echo ::set-output name=os::linux-64
+          fi
+
+      - name: Build And Upload
+        run: |
+          export PATH="${HOME}/miniconda/bin:$PATH"
+          source ${HOME}/miniconda/etc/profile.d/conda.sh
+          conda build conda-recipe --debug --output-folder bld-dir -c tidair-packages -c conda-forge
+          anaconda -t ${{ steps.get_image_info.outputs.token }} upload --force bld-dir/${{ steps.get_image_info.outputs.os }}/*.tar.bz2
+
+  docker_build:
+    name: Docker Build
+    runs-on: ubuntu-latest
+    needs: [full_build_test, small_build_test]
+    if: startsWith(github.ref, 'refs/tags/') || github.ref == 'refs/heads/pre-release'
+    steps:
+
+      # This step checks out a copy of your repository.
+      - uses: actions/checkout@v2
+        with:
+          fetch-depth: 0
+
+      - name: Get Image Information
+        id: get_image_info
+        run: |
+          echo ::set-output name=tag::`git describe --tags`
+          echo ::set-output name=branch::`echo ${GITHUB_REF} | awk 'BEGIN { FS = "/" } ; { print $3 }'`
+          if [ ${GITHUB_REF} == "refs/heads/pre-release" ]
+          then
+              echo ::set-output name=name::"rogue-dev"
+          else
+              echo ::set-output name=name::"rogue"
+          fi
+
+      # Setup docker build environment
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v1
+
+      # Login to Dockerhub
+      - name: Login to Dockerhub
+        uses: docker/login-action@v1
+        with:
+          username: tidair
+          password: ${{ secrets.DOCKERHUB_TOKEN }}
+
+      # Build and push the docker image
+      - name: Build and push image to Dockerhub
+        uses: docker/build-push-action@v2
+        with:
+          context: .
+          file: ./Dockerfile
+          push: true
+          tags: tidair/${{ steps.get_image_info.outputs.name }}:${{ steps.get_image_info.outputs.tag }}
+          build-args: branch=${{ steps.get_image_info.outputs.branch }}
+